534 projects whose own agent configuration covers scientific. These are not mods to install — they are how the maintainers of these repositories tell an agent what to do, and what to avoid.
All projects Building agents7,374Claude Code6,573Data and AI3,706Backend and APIs3,486Languages3,398Planning3,181Git and workflow3,100Code review2,701Memory and context2,354Testing2,311Research2,292DevOps and cloud2,282
Any agent Claude CodeCodexOpenCodeGitHub CopilotGemini CLICursorWindsurfKiro
| Project | Stars | Configures | Files | Always loaded |
|---|---|---|---|---|
| SeequentEvo/evo-data-converters Convert data between geoscience formats and Evo geoscience objects to improve interoperabi | 11 | Claude Code, Codex, OpenCode | 6 | 1,656 tok |
| Ching-Chiang/comsol-mcp | 11 | Claude Code, Codex, OpenCode | 2 | 2,253 tok |
| ezhou89/medical-research-mcp-suite AI-Enhanced Medical Research API unifying ClinicalTrials.gov, PubMed, and FDA databases wi | 11 | Claude Code | 1 | 2,349 tok |
| maxwellsdm1867/wheeler Turn Claude Code into an interactive scientific workspace: workflow, file system, and know | 11 | Claude Code | 48 | 5,892 tok |
| maxwell2732/codex-r-empirical-research A Codex R pipeline for reproducible empirical research by 朱晨 | Genetic social science rese | 11 | Claude Code, Codex, OpenCode | 38 | 4,355 tok |
| rlacombe/switchback-running switchback.run Ultrarunning training companion agent powered by Intervals.icu. | 10 | Claude Code, Codex, Gemini CLI, OpenCode | 16 | 14,404 tok |
| labrinyang/apple-health-analysis Mayo Clinic-grade Apple Health data analysis — Claude Code skill with 20 peer-reviewed sta | 10 | Claude Code | 1 | — |
| nasqret/lean-interact Interactive Lean 4 + Mathlib formalization from a Claude Code conversation | 10 | Claude Code | 7 | 4,212 tok |
| LBurny/symkit-mcp It is an MCP server that lets AI agents perform step-by-step symbolic derivations: calcula | 10 | Claude Code, Codex, GitHub Copilot, OpenCode | 3 | 3,013 tok |
| Sompote/plaxisMCP | 10 | Claude Code | 1 | — |
| bgreenwell/statlingo bgreenwell.github.io Explain Statistical Output with Large Language Models | 10 | Claude Code, Codex, OpenCode | 2 | 2,235 tok |
| Shiien/research-closure-harness | 10 | Claude Code, Codex, OpenCode | 4 | 1,468 tok |
| s1ddh-rth/HumanoidClimb-RL This project explores the application of reinforcement learning (RL) to train humanoid rob | 10 | Claude Code | 1 | 3,185 tok |
| briangmilnes/APAS-VERUS Proving 'Algorithms Parallel and Sequential' in Rust (APAS-AI) using Verus. | 10 | Claude Code, GitHub Copilot | 2 | 50,605 tok |
| shukwong/gnomad-mcp-server Model Context Protocol server for gnomAD (Genome Aggregation Database) GraphQL API | 10 | Claude Code | 1 | 202 tok |
| TaoELi/MaxwellLink maxwelllink.org A flexible framework for self-consistent EM-molecular simulations, powered by AI agent ski | 10 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 755 tok |
| SebastianElvis/reaper AI-native scientific research pipeline. Takes a research goal and autonomously runs multi- | 9 | Claude Code | 1 | 1,877 tok |
| cyanheads/pubchem-mcp-server npmjs.com Search the PubChem chemical database for compounds, properties, safety data, bioactivity, | 9 | Claude Code | 1 | 4,977 tok |
| qgeng1465/bio-mcp qgeng1465.github.io 🧬 BioMCP — Bioinformatics MCP server: PubMed/NCBI/BLAST/PDB/UniProt/enrichment analysis, | 9 | Claude Code | 4 | — |
| huangzhonglv/hep-workflow A skill-based agent workflow for high-energy physics phenomenology: from model proposal th | 9 | Claude Code, Codex, OpenCode | 8 | 3,316 tok |
| YuliaNuzhnenko/bioinformatics-agent-skills The #1 open-source collection of scientific AI Agent Skills, tool specifications, and prom | 9 | Claude Code, Codex, OpenCode | 2 | 435 tok |
| malkreide/swiss-public-data-mcp MCP servers connecting AI models to Swiss public and open data sources | 9 | Claude Code | 1 | 2,712 tok |
| gatordevin/avo Open reproduction of NVIDIA's AVO paper (arXiv:2603.24517): evolutionary search where an a | 9 | Claude Code, Codex, OpenCode | 2 | 1,178 tok |
| eco-emma/emma_envdata Environmental data processing for www.emma.eco | 9 | Claude Code, GitHub Copilot | 16 | 826 tok |
| Aledon8/OpenLeukemia openleukemia.com OpenLeukemia is a patient-centered platform for organizing leukemia-related medical data, | 9 | Claude Code, Codex, GitHub Copilot, OpenCode | 9 | 2,788 tok |
| pengzhangzhi/superpowers-ml Skills that make your AI agent do ML research like a skeptical scientist, not a hype machi | 8 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 1,913 tok |
| whenpoem/aiscientist An AI-driven research workflow for generating ideas, running experiments, and writing scie | 8 | Claude Code, Codex, OpenCode | 6 | 1,865 tok |
| vlln/pdffigures-mcp-server Extract figures and tables from PDF documents using this FastAPI-based service. The Figure | 8 | Claude Code | 1 | 977 tok |
| fkguo/nds-mcp Nuclear Data Services MCP server — offline SQLite-backed nuclear physics data queries | 8 | Claude Code, Codex, OpenCode | 2 | 3,519 tok |
| zhouziyue233/great-econometrics Econometrics plugin for Claude and Cursor | 8 | Claude Code | 1 | 1,160 tok |
| aryaminus/astro astro-api-a2rc.onrender.com Astrology MCP server & Agent Skill — birth charts, transits, synastry across Western, Vedi | 8 | Claude Code, Codex, GitHub Copilot, Cursor, OpenCode | 4 | 1,589 tok |
| altmetric/altmetric-mcp MCP server for Altmetric APIs - retrieve citation metrics and research output data for AI | 7 | Claude Code, Codex, OpenCode | 2 | 3,292 tok |
| donbr/lifesciences-research AI Agent wrappers for Life Sciences APIs (Open Targets, ChEMBL, UniProt). Accelerating dru | 7 | Claude Code | 23 | 4,822 tok |
| VeryMath/co-mathematician Co-mathematician project for collaborative AI-assisted mathematical research. | 7 | Claude Code, Codex, OpenCode | 9 | 2,327 tok |
| keaven/gsDesignSkills keaven.github.io Claude Code skills for clinical trial design R packages (gsDesign, gsDesign2, rpact, graph | 7 | Claude Code, Codex, OpenCode | 2 | 524 tok |
| weinaike/galaxy_morphology_mcp Galaxy Morphology Tools MCP Server | 7 | Claude Code, Codex, OpenCode | 4 | 5,402 tok |
| viplee110/economics-paper-reviewer Portable AI pre-review skill for economics papers across Codex, Claude Code, Cursor, and o | 7 | Claude Code, Codex, OpenCode | 2 | 425 tok |
| thematteroftime/agentic-md-for-dummies Paper-driven molecular-dynamics framework with an AI skill that turns physics papers into | 6 | Claude Code | 2 | — |
| malekokour/clinpharm-pmx-skills malekokour.github.io Turn any AI agent into a clinical pharmacologist and pharmacometrician. It reviews, reconc | 6 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 1,501 tok |
| PancrePal-xiaoyibao/VitaForge VitaForge | Life Workshop — an AI4S dry-lab engine focused on general medicine and the bro | 6 | Claude Code, Codex, Gemini CLI, OpenCode | 56 | 3,171 tok |
| pickleton89/cbioportal-mcp A FastMCP server for cBioPortal API with async support for improved performance | 6 | Claude Code | 1 | 2,195 tok |
| daviditkin/ltspice-mcp MCP server for LTspice: run simulations, read waveforms, and analyze circuits from a Claud | 6 | Claude Code | 2 | 2,144 tok |
| Sounio-lang/sounio sounio.vercel.app Self-hosted systems + scientific programming language with epistemic types, uncertainty pr | 6 | Claude Code, Codex, GitHub Copilot, Cursor, OpenCode | 12 | 15,060 tok |
| hooyao/vortex-funnel-gen AI-driven design optimization of a 3D-printable anti-glugging vortex funnel. Automates the | 5 | Claude Code | 2 | 2,116 tok |
| HERRY423/CellTypePilot Agent-native, local-first plugin for auditable single-cell annotation with governed eviden | 5 | Claude Code, Codex, OpenCode | 1 | 4,451 tok |
| sergiorbk/petri-net-sim An editor, a simulator, and a natural-language generator for Petri nets and Petri-object m | 5 | Claude Code, Codex, OpenCode | 6 | 1,625 tok |
| WolfpackOfOne/Q-agent wolfpackofone.github.io Agentic quantitative research framework for data pipelines, notebooks, and trading strateg | 5 | Claude Code, Codex, OpenCode | 25 | 5,903 tok |
| xxxxchaos/oh-my-sci AI agent team for medical research: an OpenCode workflow plugin for Chinese clinical resea | 5 | Claude Code, OpenCode | 15 | 898 tok |
| Steffen025/pag-extract Kongressprogramme als Datei statt 40 Browser-Tabs — liest das öffentliche Programm jedes m | 5 | Claude Code, Codex, GitHub Copilot, OpenCode | 4 | 1,767 tok |
| lucafusarbassini/research-automation scaling up scientific dreams using claude code on steroids | 5 | Claude Code | 3 | 904 tok |