341 projects whose own agent configuration covers scientific. These are not mods to install — they are how the maintainers of these repositories tell an agent what to do, and what to avoid.
All projects Building agents7,374Claude Code6,573Data and AI3,706Backend and APIs3,486Languages3,398Planning3,181Git and workflow3,100Code review2,701Memory and context2,354Testing2,311Research2,292DevOps and cloud2,282
Any agent Claude CodeCodexOpenCodeGitHub CopilotGemini CLICursorWindsurfKiro
| Project | Stars | Configures | Files | Always loaded |
|---|---|---|---|---|
| SVerITG/Metis A Research Cortex. A research companion for Claude. Your library, notes & memory stay on y | 3 | Claude Code, Codex, OpenCode | 43 | 9,723 tok |
| u9401066/pharmacy-mcp Pharmacy MCP Server - Drug information, dosage calculators, and interaction checkers via M | 3 | Claude Code, Codex, GitHub Copilot, OpenCode | 43 | 2,916 tok |
| S2mon123/FEP-Agent-Hub Evidence-first FreeCAD, Elmer FEM, and ParaView MCP automation stack with verified CAE wor | 3 | Codex, OpenCode | 1 | 221 tok |
| HighScientist/drug-designer-skill Claude Code and Codex Skill for Computational Drug Discovery: analysis, workflow design, c | 3 | Codex, OpenCode | 1 | 600 tok |
| cyanseek/VibeMath cyanseek.github.io The live, agent-readable frontier of AI mathematics: open problems, AI attempts, solution | 3 | Codex, OpenCode | 1 | 285 tok |
| valenZW/cst-sim-agent A Claude Code plugin turning CST Studio Suite into a conversational electromagnetic simula | 3 | Claude Code, Codex, OpenCode | 1 | 2,419 tok |
| cyanheads/astronomy-mcp-server npmjs.com Offline observational astronomy — planet and moon positions, rise/set, phases, eclipses, a | 2 | Claude Code, Codex, OpenCode | 2 | 14,850 tok |
| wei-ai-lab/clinical-trial-design npmjs.com Claude Code plugin & MCP server for Phase 2/3 clinical trial design. 9 tools: single-prima | 2 | Claude Code, Codex, OpenCode | 1 | 4,731 tok |
| dtunai/agent-skills-for-compute Agent-optimized skills for the full LLM lifecycle — pre-training, post-training (RL/DPO/RL | 2 | Claude Code, Codex, OpenCode | 2 | 698 tok |
| shihabshahrier/manim-coding-skill AI STEM animation skill — ManimGL for coding agents | 2 | Claude Code, Codex, GitHub Copilot, Gemini CLI, OpenCode | 4 | 1,024 tok |
| Stephen-studying/tech-route-maker Evidence-grounded editable technical route diagrams for research and engineering projects. | 2 | Claude Code, Codex, GitHub Copilot, Gemini CLI, OpenCode | 4 | 1,476 tok |
| lancegui/causal-powers Economist's discipline for data analysis, causal inference, and econometrics — reduced-for | 2 | Codex, OpenCode | 1 | 4 tok |
| vintagedon/ethops radioastronomy.io ITIL-driven autonomous DevOps team framework for scientific computing infrastructure | 2 | Codex, OpenCode | 1 | 470 tok |
| responsible-genai-hackweek/nicer-nisar exploring agents and nisar data | 2 | Claude Code, Codex, OpenCode | 4 | 172 tok |
| cacity/ResearchBrain Windows-first, local-first AI research literature workspace: supports incremental Zotero s | 2 | Claude Code, Codex | 6 | — |
| SeattleUser0/AutoSage AutoSage is a cross-platform multi-physics simulation orchestration engine built with Swif | 2 | Codex, OpenCode | 1 | 619 tok |
| meleantonio/AC4E_Pavia Participant materials for Agentic Coding for Economists, University of Pavia 2026 | 2 | Claude Code, Codex, OpenCode | 12 | 259 tok |
| Mahir-Isikli/claude-code-for-research Claude Code skills & routines for academic research — HU Berlin session, June 2026 | 2 | Claude Code, Codex, OpenCode | 2 | 236 tok |
| sxzgroup/ORBIT-Q sxzgroup.github.io Dual axis evaluation on quantum software frameworks and agents | 2 | Codex, OpenCode | 1 | 4,070 tok |
| FilippoScaramuzza/agentic-reviewer An agentic framework for academic paper peer review — a team of AI agents explores a targe | 2 | Claude Code, Codex, Cursor, OpenCode | 15 | 1,493 tok |
| RintaroMasaoka/daily-arxiv | 2 | Claude Code, Codex, OpenCode | 3 | 3,813 tok |
| ianandersonlol/HiveTransition | 2 | Claude Code, Codex, OpenCode | 2 | 2,663 tok |
| zzz20020612/scientific-figure-standards Global scientific figure and map standards skill for Codex. | 2 | Claude Code, Codex, OpenCode | 2 | 1,093 tok |
| guoshaoyang-pku/ngram-gap-lab Minimal clean reproduction of n-gram value memory induced replay-specific train/val gap on | 2 | Codex | 3 | — |
| zjgao-spin/Autoresearch_MRsequence | 2 | Codex, OpenCode | 1 | 2,279 tok |
| epicurrents/core epicurrents.io A modular JavaScript library for neurophysiological data | 2 | Codex, OpenCode | 1 | 11,991 tok |
| Guo-Chenxu/paper-agent What era are we living in, still doing traditional research? | 2 | Claude Code, Codex | 11 | 899 tok |
| burakcanpolat/med-guide AI-powered medical image analysis & clinical assistant. Understands X-rays, CT, MRI, DICOM | 2 | Claude Code, Codex, OpenCode | 5 | 4,676 tok |
| stanveer/Biomedical-Agent-DB-Karpathy A production-oriented foundation for building a biomedical knowledge base for LLM-assisted | 2 | Claude Code, Codex | 2 | 553 tok |
| AIHongDOU/DoctorWhy | 2 | Claude Code, Codex, OpenCode | 2 | 613 tok |
| fbabelle/PrettySeriousResearcher | 2 | Claude Code, Codex | 17 | — |
| smallinaUCSD/growth-percentile-skill | 2 | Claude Code, Codex, OpenCode | 2 | 998 tok |
| FlowRegSuite/flowreg-agent-skills | 2 | Claude Code, Codex, OpenCode | 1 | 1,172 tok |
| biocontext-ai/protocol-mcp Wet lab protocol retrieval MCP server, including protocols.io | 2 | Claude Code, Codex, OpenCode | 2 | 68 tok |
| chokukil/timesfm-mcp MCP server for local GPU TimesFM forecasting | 2 | Codex, OpenCode | 1 | 150 tok |
| cyanheads/paleobiology-mcp-server npmjs.com Search fossil occurrences, resolve taxon fossil ranges, plot diversity through deep time, | 2 | Claude Code, Codex, OpenCode | 2 | 13,846 tok |
| tufantunc/axiom-advanced-math-mcp npmjs.com Exact symbolic math for LLMs: integrals, equations, matrices, and claim verification via G | 2 | Codex, OpenCode | 1 | 1,272 tok |
| keta1930/icml2026-mcp keta1930.github.io MCP server for session-aware hybrid search over 6,341 ICML 2026 papers | 1 | Claude Code, Codex, OpenCode | 2 | 977 tok |
| Tom409114/research-repo-doctor research-repo-doctor-bckncrcwwmg6jrbsrd6btj.streamlit.app Artifact Evaluation readiness checker for research code: static scan, safe fixes, verify l | 1 | Codex, GitHub Copilot, OpenCode | 2 | 1,043 tok |
| ashwinvis/scb-opendata-mcp An unofficial FastMCP server that provides access to Statistics Sweden's PxWebApi v2, offe | 1 | Codex, OpenCode | 1 | 750 tok |
| cyanheads/faostat-mcp-server npmjs.com Global food & agriculture statistics from the UN FAOSTAT bulk-download corpus, served from | 1 | Claude Code, Codex, OpenCode | 2 | 14,318 tok |
| cyanheads/calculator-mcp-server npmjs.com Evaluate, simplify, and differentiate mathematical expressions via MCP. STDIO or Streamabl | 1 | Claude Code, Codex, OpenCode | 2 | 12,660 tok |
| cyanheads/gnomad-genetics-mcp-server npmjs.com Ancestry allele frequencies, LoF constraint, variant lists, and coverage from gnomAD, join | 1 | Claude Code, Codex, OpenCode | 2 | 12,548 tok |
| cyanheads/bls-labor-mcp-server npmjs.com Fetch US Bureau of Labor Statistics data — CPI, unemployment, wages, JOLTS, and more via M | 1 | Claude Code, Codex, OpenCode | 2 | 11,150 tok |
| cyanheads/chembl-mcp-server npmjs.com Link compounds to protein targets, rank bioactivity (IC50/Ki/EC50), and look up drug mecha | 1 | Claude Code, Codex, OpenCode | 2 | 14,242 tok |
| dfieser/hea-bench dfieser.github.io Free high-entropy alloy (HEA) and high-entropy oxide calculator: mixing entropy, atomic-si | 1 | Claude Code, Codex, OpenCode | 2 | 7,698 tok |
| racehooks/racehooks-mcp racehooks.io MCP server for RaceHooks — F1 live timing tools for Claude, Cursor, and Windsurf | 1 | Codex, OpenCode | 1 | 792 tok |
| synabreu/arxiv-wiki synabreu.github.io arxiv-wiki hosting services | 1 | Codex, OpenCode | 1 | 121 tok |
| mdfranz/saruca Mining Gemini CLI | 1 | Codex, Gemini CLI, OpenCode | 2 | 2,542 tok |
| riccardovietri/thermal-mcp-server | 1 | Claude Code, Codex, OpenCode | 2 | 2,257 tok |