329 projects whose own agent configuration covers scientific. These are not mods to install — they are how the maintainers of these repositories tell an agent what to do, and what to avoid.
All projects Building agents7,374Claude Code6,573Data and AI3,706Backend and APIs3,486Languages3,398Planning3,181Git and workflow3,100Code review2,701Memory and context2,354Testing2,311Research2,292DevOps and cloud2,282
Any agent Claude CodeCodexOpenCodeGitHub CopilotGemini CLICursorWindsurfKiro
| Project | Stars | Configures | Files | Always loaded |
|---|---|---|---|---|
| valenZW/cst-sim-agent A Claude Code plugin turning CST Studio Suite into a conversational electromagnetic simula | 3 | Claude Code, Codex, OpenCode | 1 | 2,419 tok |
| cyanheads/astronomy-mcp-server npmjs.com Offline observational astronomy — planet and moon positions, rise/set, phases, eclipses, a | 2 | Claude Code, Codex, OpenCode | 2 | 14,850 tok |
| wei-ai-lab/clinical-trial-design npmjs.com Claude Code plugin & MCP server for Phase 2/3 clinical trial design. 9 tools: single-prima | 2 | Claude Code, Codex, OpenCode | 1 | 4,731 tok |
| dtunai/agent-skills-for-compute Agent-optimized skills for the full LLM lifecycle — pre-training, post-training (RL/DPO/RL | 2 | Claude Code, Codex, OpenCode | 2 | 698 tok |
| shihabshahrier/manim-coding-skill AI STEM animation skill — ManimGL for coding agents | 2 | Claude Code, Codex, GitHub Copilot, Gemini CLI, OpenCode | 4 | 1,024 tok |
| Stephen-studying/tech-route-maker Evidence-grounded editable technical route diagrams for research and engineering projects. | 2 | Claude Code, Codex, GitHub Copilot, Gemini CLI, OpenCode | 4 | 1,476 tok |
| lancegui/causal-powers Economist's discipline for data analysis, causal inference, and econometrics — reduced-for | 2 | Codex, OpenCode | 1 | 4 tok |
| vintagedon/ethops radioastronomy.io ITIL-driven autonomous DevOps team framework for scientific computing infrastructure | 2 | Codex, OpenCode | 1 | 470 tok |
| responsible-genai-hackweek/nicer-nisar exploring agents and nisar data | 2 | Claude Code, Codex, OpenCode | 4 | 172 tok |
| SeattleUser0/AutoSage AutoSage is a cross-platform multi-physics simulation orchestration engine built with Swif | 2 | Codex, OpenCode | 1 | 619 tok |
| meleantonio/AC4E_Pavia Participant materials for Agentic Coding for Economists, University of Pavia 2026 | 2 | Claude Code, Codex, OpenCode | 12 | 259 tok |
| Mahir-Isikli/claude-code-for-research Claude Code skills & routines for academic research — HU Berlin session, June 2026 | 2 | Claude Code, Codex, OpenCode | 2 | 236 tok |
| sxzgroup/ORBIT-Q sxzgroup.github.io Dual axis evaluation on quantum software frameworks and agents | 2 | Codex, OpenCode | 1 | 4,070 tok |
| FilippoScaramuzza/agentic-reviewer An agentic framework for academic paper peer review — a team of AI agents explores a targe | 2 | Claude Code, Codex, Cursor, OpenCode | 15 | 1,493 tok |
| RintaroMasaoka/daily-arxiv | 2 | Claude Code, Codex, OpenCode | 3 | 3,813 tok |
| ianandersonlol/HiveTransition | 2 | Claude Code, Codex, OpenCode | 2 | 2,663 tok |
| zzz20020612/scientific-figure-standards Global scientific figure and map standards skill for Codex. | 2 | Claude Code, Codex, OpenCode | 2 | 1,093 tok |
| zjgao-spin/Autoresearch_MRsequence | 2 | Codex, OpenCode | 1 | 2,279 tok |
| epicurrents/core epicurrents.io A modular JavaScript library for neurophysiological data | 2 | Codex, OpenCode | 1 | 11,991 tok |
| burakcanpolat/med-guide AI-powered medical image analysis & clinical assistant. Understands X-rays, CT, MRI, DICOM | 2 | Claude Code, Codex, OpenCode | 5 | 4,676 tok |
| AIHongDOU/DoctorWhy | 2 | Claude Code, Codex, OpenCode | 2 | 613 tok |
| smallinaUCSD/growth-percentile-skill | 2 | Claude Code, Codex, OpenCode | 2 | 998 tok |
| FlowRegSuite/flowreg-agent-skills | 2 | Claude Code, Codex, OpenCode | 1 | 1,172 tok |
| biocontext-ai/protocol-mcp Wet lab protocol retrieval MCP server, including protocols.io | 2 | Claude Code, Codex, OpenCode | 2 | 68 tok |
| chokukil/timesfm-mcp MCP server for local GPU TimesFM forecasting | 2 | Codex, OpenCode | 1 | 150 tok |
| cyanheads/paleobiology-mcp-server npmjs.com Search fossil occurrences, resolve taxon fossil ranges, plot diversity through deep time, | 2 | Claude Code, Codex, OpenCode | 2 | 13,846 tok |
| tufantunc/axiom-advanced-math-mcp npmjs.com Exact symbolic math for LLMs: integrals, equations, matrices, and claim verification via G | 2 | Codex, OpenCode | 1 | 1,272 tok |
| keta1930/icml2026-mcp keta1930.github.io MCP server for session-aware hybrid search over 6,341 ICML 2026 papers | 1 | Claude Code, Codex, OpenCode | 2 | 977 tok |
| Tom409114/research-repo-doctor research-repo-doctor-bckncrcwwmg6jrbsrd6btj.streamlit.app Artifact Evaluation readiness checker for research code: static scan, safe fixes, verify l | 1 | Codex, GitHub Copilot, OpenCode | 2 | 1,043 tok |
| ashwinvis/scb-opendata-mcp An unofficial FastMCP server that provides access to Statistics Sweden's PxWebApi v2, offe | 1 | Codex, OpenCode | 1 | 750 tok |
| cyanheads/faostat-mcp-server npmjs.com Global food & agriculture statistics from the UN FAOSTAT bulk-download corpus, served from | 1 | Claude Code, Codex, OpenCode | 2 | 14,318 tok |
| cyanheads/calculator-mcp-server npmjs.com Evaluate, simplify, and differentiate mathematical expressions via MCP. STDIO or Streamabl | 1 | Claude Code, Codex, OpenCode | 2 | 12,660 tok |
| cyanheads/gnomad-genetics-mcp-server npmjs.com Ancestry allele frequencies, LoF constraint, variant lists, and coverage from gnomAD, join | 1 | Claude Code, Codex, OpenCode | 2 | 12,548 tok |
| cyanheads/bls-labor-mcp-server npmjs.com Fetch US Bureau of Labor Statistics data — CPI, unemployment, wages, JOLTS, and more via M | 1 | Claude Code, Codex, OpenCode | 2 | 11,150 tok |
| cyanheads/chembl-mcp-server npmjs.com Link compounds to protein targets, rank bioactivity (IC50/Ki/EC50), and look up drug mecha | 1 | Claude Code, Codex, OpenCode | 2 | 14,242 tok |
| dfieser/hea-bench dfieser.github.io Free high-entropy alloy (HEA) and high-entropy oxide calculator: mixing entropy, atomic-si | 1 | Claude Code, Codex, OpenCode | 2 | 7,698 tok |
| racehooks/racehooks-mcp racehooks.io MCP server for RaceHooks — F1 live timing tools for Claude, Cursor, and Windsurf | 1 | Codex, OpenCode | 1 | 792 tok |
| synabreu/arxiv-wiki synabreu.github.io arxiv-wiki hosting services | 1 | Codex, OpenCode | 1 | 121 tok |
| mdfranz/saruca Mining Gemini CLI | 1 | Codex, Gemini CLI, OpenCode | 2 | 2,542 tok |
| GadatheGod/freecad-mcp-pro Professional-grade FreeCAD MCP server enabling AI assistants to create parametric 3D model | 1 | Claude Code, OpenCode | 7 | — |
| riccardovietri/thermal-mcp-server | 1 | Claude Code, Codex, OpenCode | 2 | 2,257 tok |
| moxus/intervals-icu-mcp-ts MCP Server for intervals.icu | 1 | Claude Code, Codex, OpenCode | 2 | 1,239 tok |
| SVerITG/Metis_PH A Research Cortex. A research companion for Claude. Your library, notes & memory stay on y | 1 | Claude Code, Codex, OpenCode | 43 | 9,723 tok |
| saitoomituru/PSYCHO-Py800MCP MCP bridge for oscilloscope, logic analyzer, and microscope automation. AI-driven waveform | 1 | Claude Code, Codex, OpenCode | 2 | 2,774 tok |
| biocontext-ai/nucleotide_archive_mcp European Nucleotide Archive dataset search MCP server for agentic RNA-sequencing data disc | 1 | Claude Code, Codex, OpenCode | 2 | 492 tok |
| dna-seq/just-prs-mcp Just-PRS MCP server | 1 | Claude Code, Codex, OpenCode | 4 | 3,963 tok |
| florianbuetow/arxiv-smart-mcp MCP server for searching and reading arXiv papers from AI assistants — self-rate-limited t | 1 | Codex, OpenCode | 1 | 653 tok |
| Happypig375/vscode-jupyter-mcp-server | 1 | Codex, OpenCode | 1 | 651 tok |
| cyanheads/uniprot-mcp-server npmjs.com Search UniProtKB by protein function, fetch curated records, map IDs across databases, and | 1 | Claude Code, Codex, OpenCode | 2 | 13,062 tok |
| cyanheads/noaa-spaceweather-mcp-server npmjs.com Query NOAA SWPC space weather: geomagnetic storm scales, Kp index, aurora forecasts, solar | 1 | Claude Code, Codex, OpenCode | 2 | 10,296 tok |