ncbi skills

68 tagged ncbi, measured the same way as everything else here.

Browse within: Entrez 31evidence-based-medicine 31literature-search 31bioinformatics 5

add-tool

01

cyanheads/pubmed-mcp-server

Skill Claude CodeCodex

Scaffold a new MCP tool definition. Use when the user asks to add a tool, create a new tool, or implement a new capability for the server.

141 11d ago A 35 tokens copy · 100% Apache-2.0

design-mcp-server

02

cyanheads/pubmed-mcp-server

Skill Claude CodeCodex

Design the tool surface, resources, and service layer for a new MCP server. Use when starting a new server, planning a major feature expansion, or when the user describes a domain/API they want to expose via MCP. Produces a design doc at docs/design.md that drives implementation.

141 11d ago A 62 tokens copy · 100% Apache-2.0

release-and-publish

03

cyanheads/pubmed-mcp-server

Skill Claude CodeCodex

Ship a release end-to-end across every registry the project targets (npm, MCP Registry, GitHub Releases for .mcpb bundles, GHCR). Runs the final verification gate, pushes commits and tags, then publishes to each applicable destination. Assumes git wrapup (version bumps, changelog, commit, annotated tag) is already…

141 11d ago A 112 tokens copy · 92% Apache-2.0

git-precommit

04

u9401066/pubmed-search-mcp

Skill Claude CodeCodex

Orchestrate pre-commit workflow including Memory Bank sync, README/CHANGELOG/ROADMAP updates, and MCP tool count sync. Triggers: GIT, gc, push, commit, 提交, 準備 commit, 要提交了, git commit, pre-commit, 推送.

26 14d ago A 66 tokens

pdf-asset-extractor

05

u9401066/pubmed-search-mcp

Skill Claude CodeCodex

MCP tools for PDF ingestion → extract figures, tables, sections → build knowledge graph. Transforms PDF into queryable assets (images, tables, text) with cross-document RAG. Triggers: PDF, ingest, extract, 圖片, 表格, figure, table, manifest, knowledge graph, 知識圖譜, RAG, 文獻分析.

26 14d ago A 84 tokens

test-generator

06

u9401066/pubmed-search-mcp

Skill Claude CodeCodex

Generate comprehensive test suites including static analysis, unit tests, integration tests, E2E tests, and coverage reports. Triggers: TG, test, 測試, 寫測試, coverage, 覆蓋率, pytest, unittest, 驗證.

26 14d ago A 58 tokens

bio-analysis

07

qgeng1465/bio-mcp

Skill Claude CodeCodex

Multi-step bioinformatics analysis workflow using BioMCP — data type detection, tool recommendation, cross-database validation, and honest insight generation. Use when the user provides raw bio data (gene list, sequence, variant, compound, IDs) and wants analysis or insights.

9 3d ago A 57 tokens

qgeng1465/bio-mcp

Skill Claude CodeCodex

Match raw bioinformatics data to the right databases and tools. For each data type gives a ranked list of suitable databases, expected outputs and insights, with two paths — let the intelligentanalyze agent decide, or call the specific tools directly yourself. Use whenever the user asks "what can I do with this data".

9 3d ago A 69 tokens

bio-mcp-usage

09

qgeng1465/bio-mcp

Skill Claude CodeCodex

How to query the 36 BioMCP databases effectively — tool selection per data type, NCBI rate limits, honest verification. Use whenever a task involves literature search, sequences, structures, enrichment, interactions, compounds, omics data, or the intelligentanalyze agent.

9 3d ago A 62 tokens