16,357 mods in this category, of every kind an agent can take. Each one carries what it costs per session, what the scan found, and whether it is the original.
ActiveInferenceInstitute/GEO-INFER
Skill Claude CodeCodex
Geospatial Active Inference framework with 45 modules for ecological, civic, and commercial spatial analysis. Use when working with geospatial data, Active Inference, Bayesian modeling, H3 hexagonal indexing, spatial statistics, or any domain-specific geographic analysis (agriculture, health, economics, risk, climate…
Jill0099/causal-inference-mixtape
Skill Claude CodeCodex
This skill should be used when the user asks to "implement a DiD regression", "run a staggered difference-in-differences", "set up an event study", "implement IV / 2SLS", "run a regression discontinuity design", "build synthetic control", "do propensity score matching", "test parallel trends", "run Honest DiD", "wild…
MCP server Claude CodeCodexCursor +2
An MCP server for scRNA-Seq analysis with natural language! Runs locally from the scmcp Python package.
HolobiomicsLab/asb-skill-collections
Skill Claude CodeCodex
Use when when you have aligned ChIP-Seq reads (single-end BED or paired-end BEDPE format) and need to identify enriched genomic regions by comparing ChIP signal against control background, with the ability to customize fragment length estimation, local bias calculation, and peak score thresholds.
Skill Claude CodeCodex
Use when answering biomedical research questions that need source-backed evidence from local MCP servers, including gene, disease, drug, variant, phenotype, study, or clinical-trial questions.
MCP server Claude CodeCodexCursor +2
A conversational MCP server interface for PyMOL protein visualization. Runs locally from the mcpymol Python package.
MCP server Claude CodeCodexCursor +2
Consolidated MCP server for scholarly research across PubMed, ArXiv, Google Scholar, and JSTOR (5 powerful tools instead of 24). Runs locally from the scholarly-research-mcp npm package.
SidneyBissoli/medical-terminologies-mcp
MCP server Claude CodeCodexCursor +2
Diagnoses, drugs & lab codes: ICD-11, LOINC, RxNorm, MeSH, ATC, CID-10. 33 tools, MIT. Runs locally from the medical-terminologies-mcp npm package. Needs 4 environment variables to run.
Skill Claude CodeCodex
A Chinese-language guide for writing and revising artificial-intelligence research papers for academic conferences.
Skill Claude CodeCodex
A reference skill for quantitative investing factors—measurable signals such as momentum or volatility used to build trading strategies. It covers factor collections from Qlib and WorldQuant.
Skill Claude CodeCodex
Reconstruct ancestral states at internal phylogenetic nodes for sequences (PAML codeml, IQ-TREE --ancestral, GRASP, FastML), discrete traits (corHMM hidden-rate Markov, ape::ace, phytools::make.simmap stochastic mapping, BayesTraits), and continuous traits (phytools::fastAnc, geiger Brownian/OU, RPANDA). Use when…
MCP server Claude CodeCodexCursor +2
Bounded read-only HEC-RAS text information using public RAS Commander APIs. Runs locally from the ras-commander-mcp Python package. Needs 1 environment variable to run.
haruhisa-enomoto/math-research-harness
Agent Claude Code
Isolated forward-blind reader for a frozen mathematics manuscript. Spawn it only as the single reader of a continuous first-reader relay; it takes its whole task from the frozen DIRECTION.md it is pointed at.
Skill Claude CodeCodex
Write optimized Triton GPU kernels for deep learning operations. Covers the full spectrum from basic vector ops to Flash Attention, persistent matmul, fused normalization, quantized GEMM, and memory-efficient patterns.
Augmented-Nature/NCBI-Datasets-MCP-Server
MCP server Claude CodeCodexCursor +2
MCP server "ncbi-datasets-server" as configured in Augmented-Nature/NCBI-Datasets-MCP-Server. Runs locally from the ncbi-datasets-server npm package.
tianqitang1/enrichr-mcp-server
Plugin Claude Code
Bundles 1 skill, 1 MCP server · 116 tokens together
Gene set enrichment analysis via the Enrichr API: MCP tools for enrichment and library discovery, plus an enrichr-api skill for raw API work the tools do not cover (reverse gene lookup, library download, batch enrichment).
MCP server Claude CodeCodexCursor +2
MCP server for safe, validated, reproducible access to Copernicus environmental data. Runs locally from the copernicus-mcp Python package.
calebzu/pmsm-control-claude-skills-for-matlab
Skill Claude Code
Tidy the layout of an already-built Simulink model — make it compact and readable, remove block overlaps and lines that cut through blocks, and honestly minimize line-line crossings without ever falsely promising zero. Quantifies block overlaps, line-through-block hits, line-line crossings, model extent, and graph…
MCP server Claude CodeCodexCursor +2
PubMed & Europe PMC literature search, US/UK drug labelling, and clinical trials for AI assistants. Runs locally from the @pharmatools/pubcrawl npm package. Needs 1 environment variable to run.
MCP server Claude CodeCodexCursor +2
MCP server for YADE open-source discrete element method simulation. Runs locally from the yade-mcp Python package.
Skill Claude CodeCodex
Move fast AND rigorously through the full AI/ML research loop: framing a testable hypothesis, reviewing the literature, reproducing a baseline, designing leak-free experiments, tracking runs, analyzing results honestly, and writing up. Use this whenever the user is doing machine-learning or AI research — reading or…
Skill Claude CodeCodex
Central hub for academic paper writing with selectable author styles. Use when the user asks to write, revise, evaluate, or distill any section of an academic paper.
Skill Claude CodeCodex needs its repo
A multi-stage workflow for mathematical modelling competitions and similar problems using documents and spreadsheet data. It covers problem review, model selection, code, charts, validation, reproducibility, and writing handoff materials.
ysyecust/write-reader-first-papers
Skill Codex
Rewrite, restructure, translate, or audit academic manuscripts so first-time readers can identify the problem, contribution, evidence, value, and limitations without decoding internal jargon or formulaic prose. Use for English or Chinese papers, theses, dissertations, abstracts, introductions, methods, results…
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