671 projects whose own agent configuration covers scientific. These are not mods to install — they are how the maintainers of these repositories tell an agent what to do, and what to avoid.
All projects Building agents7,374Claude Code6,573Data and AI3,706Backend and APIs3,486Languages3,398Planning3,181Git and workflow3,100Code review2,701Memory and context2,354Testing2,311Research2,292DevOps and cloud2,282
Any agent Claude CodeCodexOpenCodeGitHub CopilotGemini CLICursorWindsurfKiro
| Project | Stars | Configures | Files | Always loaded |
|---|---|---|---|---|
| agtm1199/uber-polya agtm1199.github.io A universal problem-solving skill for code agents (e.g. Claude, Codex), inspired by George | 4 | Claude Code, Codex, GitHub Copilot, OpenCode | 3 | 3,214 tok |
| codeprimate/math-mcp MCP server providing symbolic mathematics for Cursor AI and Claude Desktop. Solve equation | 4 | Codex, OpenCode | 1 | 1,069 tok |
| cdeistopened/ask-huberman Ask Huberman — Claude Code plugin for Huberman Lab podcast. 12 interactive skills, 56 fram | 4 | Claude Code | 1 | 1,016 tok |
| isaaccorley/planetary-computer-mcp A MCP Server for querying and downloading satellite imagery from the Planetary Computer ST | 4 | Codex, OpenCode | 1 | 1,493 tok |
| codewithcheese/jupyter-kernel-mcp MCP server for stateful Jupyter kernel development with multi-kernel support | 4 | Claude Code | 1 | 285 tok |
| aws-samples/sample-laboratory-data-transformation-mcp | 4 | Claude Code, Codex | 1 | — |
| Cadasto/openehr-assistant-plugin cadasto.github.io openEHR assistant AI plugin suite with Skills, commands, and MCP server configuration for | 4 | Claude Code, Codex, GitHub Copilot, OpenCode | 3 | 6,386 tok |
| vantasnerdan/substrate-framework Claim-governed, agentic workflow for substrate physics framework | 4 | Codex, OpenCode | 5 | 13,122 tok |
| StepFunctionLLC/mcp-server-cantera An MCP server wrapped around Cantera to facilitate use by an LLM | 4 | Claude Code, Codex, GitHub Copilot, OpenCode | 3 | 2,463 tok |
| panoptes/panoptes-utils panoptes.github.io A set of Astronomical utility functions. PANOPTES style. :hammer_and_wrench: :telescope: : | 4 | Codex, GitHub Copilot, Gemini CLI, OpenCode | 3 | 8,008 tok |
| tkpratardan/lemma AI harness for DS/ML workflows. | 3 | Codex, GitHub Copilot, OpenCode | 2 | 558 tok |
| cyanheads/brapi-mcp-server npmjs.com A collaborative BrAPI v2.1 workspace for multi-agent research via MCP. Search studies, ger | 3 | Claude Code, Codex, OpenCode | 2 | 16,236 tok |
| edithatogo/mchs edithatogo.github.io Software tools for IHACPA National Weighted Activity Unit microcosting and health-service | 3 | Codex, OpenCode | 1 | 86 tok |
| rcsb/rcsb-mcp MCP server for RCSB PDB APIs | 3 | Codex, OpenCode | 1 | 1,495 tok |
| dengxuhui/igpsport-mcp pypi.org A local MCP server that brings iGPSport cycling data into LLM clients, with training metri | 3 | Claude Code | 1 | 2,436 tok |
| totonga/odsbox-jaquel-mcp MCP server to work with odsbox to access ASAM ODS HTTP API. | 3 | Codex, OpenCode | 1 | 63 tok |
| SFETNI/Scientific-Writing-Skills-Claude-Code-Codex Human-in-the-loop quality-control framework for AI-assisted scientific manuscript preparat | 3 | Claude Code | 1 | 1,131 tok |
| liliwen88/doctor.skill Family Health Doctor — AI Medical Assistant Skill / Family Health Doctor · AI Medical Assi | 3 | Claude Code | 1 | 1,105 tok |
| Hongda-Zhao/bio-gene-to-reference-tree Auditable agent skill for resolving protein queries, selecting references, and planning re | 3 | GitHub Copilot | 1 | 105 tok |
| SVerITG/Metis A Research Cortex. A research companion for Claude. Your library, notes & memory stay on y | 3 | Claude Code, Codex, OpenCode | 43 | 9,723 tok |
| YixuanYang00/math-beamer-slides-skill A skill for creating, compiling, reviewing, and polishing rigorous mathematical Beamer/LaT | 3 | GitHub Copilot | 2 | 2,139 tok |
| kmaneesh/biopython-mcp MCP interface to BioPython | 3 | Claude Code | 1 | 1,210 tok |
| u9401066/pharmacy-mcp Pharmacy MCP Server - Drug information, dosage calculators, and interaction checkers via M | 3 | Claude Code, Codex, GitHub Copilot, OpenCode | 43 | 2,916 tok |
| MCPmed/allenbrain-mcp A comprehensive Model Context Protocol (MCP) server for querying the Allen Institute for B | 3 | Claude Code | 1 | 594 tok |
| Sage-Bionetworks/synapse-mcp synapse.org A Model Context Protocol (MCP) server that enables AI agent access to Synapse. Deployed in | 3 | Claude Code | 1 | 1,295 tok |
| AiAgentKarl/aviation-mcp-server MCP server for aviation data — Live flight tracking, airport weather, airline info | 3 | Claude Code | 1 | 273 tok |
| gregario/astronomy-oracle Celestial object catalog and observing session planner MCP server | 3 | Claude Code | 1 | 250 tok |
| zachswift615/audio-analysis-mcp | 3 | Claude Code | 3 | 685 tok |
| puran-water/water-chemistry-mcp Consolidated into PuranOS — see github.com/puran-water/puranos-public | 3 | Claude Code | 1 | 5,898 tok |
| S2mon123/FEP-Agent-Hub Evidence-first FreeCAD, Elmer FEM, and ParaView MCP automation stack with verified CAE wor | 3 | Codex, OpenCode | 1 | 221 tok |
| HighScientist/drug-designer-skill Claude Code and Codex Skill for Computational Drug Discovery: analysis, workflow design, c | 3 | Codex, OpenCode | 1 | 600 tok |
| Bokai-Zhao/Pathology-Wiki | 3 | Claude Code | 6 | 8,365 tok |
| cyanseek/VibeMath cyanseek.github.io The live, agent-readable frontier of AI mathematics: open problems, AI attempts, solution | 3 | Codex, OpenCode | 1 | 285 tok |
| valenZW/cst-sim-agent A Claude Code plugin turning CST Studio Suite into a conversational electromagnetic simula | 3 | Claude Code, Codex, OpenCode | 1 | 2,419 tok |
| andylbrummer/math-mcp GPU-accelerated MCP servers for computational mathematics, physics simulations, and machin | 2 | Claude Code | 2 | 974 tok |
| cyanheads/astronomy-mcp-server npmjs.com Offline observational astronomy — planet and moon positions, rise/set, phases, eclipses, a | 2 | Claude Code, Codex, OpenCode | 2 | 14,850 tok |
| wei-ai-lab/clinical-trial-design npmjs.com Claude Code plugin & MCP server for Phase 2/3 clinical trial design. 9 tools: single-prima | 2 | Claude Code, Codex, OpenCode | 1 | 4,731 tok |
| taehojo/alphagenome-mcp MCP server for AI-powered genomic variant analysis | 2 | Claude Code | 1 | 952 tok |
| dtunai/agent-skills-for-compute Agent-optimized skills for the full LLM lifecycle — pre-training, post-training (RL/DPO/RL | 2 | Claude Code, Codex, OpenCode | 2 | 698 tok |
| jeonnoin-alt/Eureka Scientific TDD for AI coding agents: pre-registration before data, claims audit before sub | 2 | Gemini CLI | 1 | 27 tok |
| Sliky1/lagrangian-skills Agent Skill for constrained optimization via ALM/ADMM/KKT — with adversarial guards, COOP | 2 | Claude Code | 1 | 236 tok |
| shihabshahrier/manim-coding-skill AI STEM animation skill — ManimGL for coding agents | 2 | Claude Code, Codex, GitHub Copilot, Gemini CLI, OpenCode | 4 | 1,024 tok |
| Stephen-studying/tech-route-maker Evidence-grounded editable technical route diagrams for research and engineering projects. | 2 | Claude Code, Codex, GitHub Copilot, Gemini CLI, OpenCode | 4 | 1,476 tok |
| lancegui/causal-powers Economist's discipline for data analysis, causal inference, and econometrics — reduced-for | 2 | Codex, OpenCode | 1 | 4 tok |
| vintagedon/ethops radioastronomy.io ITIL-driven autonomous DevOps team framework for scientific computing infrastructure | 2 | Codex, OpenCode | 1 | 470 tok |
| Dariolex/pubmed-search-agent Search PubMed in plain English: NL query translation, MeSH resolution, semantic relevance | 2 | Claude Code | 2 | 3,580 tok |
| responsible-genai-hackweek/nicer-nisar exploring agents and nisar data | 2 | Claude Code, Codex, OpenCode | 4 | 172 tok |
| gqy20/genome-mcp pypi.org | 2 | Claude Code | 1 | 2,957 tok |
| cacity/ResearchBrain Windows-first, local-first AI research literature workspace: supports incremental Zotero s | 2 | Claude Code, Codex | 6 | — |
| MacromNex/boltz_mcp Boltz2 MCP server for protein structure and affinity prediction | 2 | Claude Code | 1 | 1,890 tok |