671 projects whose own agent configuration covers scientific. These are not mods to install — they are how the maintainers of these repositories tell an agent what to do, and what to avoid.
All projects Building agents7,374Claude Code6,573Data and AI3,706Backend and APIs3,486Languages3,398Planning3,181Git and workflow3,100Code review2,701Memory and context2,354Testing2,311Research2,292DevOps and cloud2,282
Any agent Claude CodeCodexOpenCodeGitHub CopilotGemini CLICursorWindsurfKiro
| Project | Stars | Configures | Files | Always loaded |
|---|---|---|---|---|
| MacromNex/bindcraft_mcp BindCraft MCP server for de novo protein binder design | 2 | Claude Code | 1 | 737 tok |
| MacromNex/boltzgen_mcp BoltzGen MCP server for protein binder design | 2 | Claude Code | 1 | 1,058 tok |
| Joe-Heffer/trainer An open-source agentic AI personal trainer for fitness and health. | 2 | Claude Code | 1 | 1,005 tok |
| Jeny-Liu/claude-code-biology-research ?? A comprehensive guide to using Claude Code as an AI-powered assistant for computational | 2 | Claude Code | 1 | — |
| SeattleUser0/AutoSage AutoSage is a cross-platform multi-physics simulation orchestration engine built with Swif | 2 | Codex, OpenCode | 1 | 619 tok |
| meleantonio/AC4E_Pavia Participant materials for Agentic Coding for Economists, University of Pavia 2026 | 2 | Claude Code, Codex, OpenCode | 12 | 259 tok |
| Felipe-SO/coarse-ink-claude-code Coarse.ink to run directly in Claude Code as skills. | 2 | Claude Code | 9 | 2,709 tok |
| Mahir-Isikli/claude-code-for-research Claude Code skills & routines for academic research — HU Berlin session, June 2026 | 2 | Claude Code, Codex, OpenCode | 2 | 236 tok |
| sangwonme/ClaudeCode-SeeFig-Skill | 2 | Claude Code | 1 | — |
| sxzgroup/ORBIT-Q sxzgroup.github.io Dual axis evaluation on quantum software frameworks and agents | 2 | Codex, OpenCode | 1 | 4,070 tok |
| jbrogueira/bank_of_portugal_ai_2026 Course materials for AI Tools for Economics Research, Banco de Portugal 2026 | 2 | Claude Code | 4 | 858 tok |
| TencentEdgeOne/claude-agent-starter-python | 2 | Claude Code | 1 | — |
| FilippoScaramuzza/agentic-reviewer An agentic framework for academic paper peer review — a team of AI agents explores a targe | 2 | Claude Code, Codex, Cursor, OpenCode | 15 | 1,493 tok |
| Eklavya-San/CTQ-extraction eklavya-san.github.io AI agent skill for extracting Critical-To-Quality (CTQ) parameters, GD&T feature control f | 2 | Claude Code, Cursor, Gemini CLI | 3 | 231 tok |
| RintaroMasaoka/daily-arxiv | 2 | Claude Code, Codex, OpenCode | 3 | 3,813 tok |
| ianandersonlol/HiveTransition | 2 | Claude Code, Codex, OpenCode | 2 | 2,663 tok |
| zzz20020612/scientific-figure-standards Global scientific figure and map standards skill for Codex. | 2 | Claude Code, Codex, OpenCode | 2 | 1,093 tok |
| guoshaoyang-pku/ngram-gap-lab Minimal clean reproduction of n-gram value memory induced replay-specific train/val gap on | 2 | Codex | 3 | — |
| zjgao-spin/Autoresearch_MRsequence | 2 | Codex, OpenCode | 1 | 2,279 tok |
| epicurrents/core epicurrents.io A modular JavaScript library for neurophysiological data | 2 | Codex, OpenCode | 1 | 11,991 tok |
| tsdfs930514/econ-research-workflow-cn Economics research workflow — a Claude Code-driven reproducible economics research templat | 2 | Claude Code | 17 | 4,056 tok |
| Guo-Chenxu/paper-agent What era are we living in, still doing traditional research? | 2 | Claude Code, Codex | 11 | 899 tok |
| champagnepapihz/math-modeling-starter A mathematical modeling competition starter template with a standardized directory structu | 2 | Claude Code | 1 | 5,366 tok |
| burakcanpolat/med-guide AI-powered medical image analysis & clinical assistant. Understands X-rays, CT, MRI, DICOM | 2 | Claude Code, Codex, OpenCode | 5 | 4,676 tok |
| stanveer/Biomedical-Agent-DB-Karpathy A production-oriented foundation for building a biomedical knowledge base for LLM-assisted | 2 | Claude Code, Codex | 2 | 553 tok |
| AIHongDOU/DoctorWhy | 2 | Claude Code, Codex, OpenCode | 2 | 613 tok |
| fbabelle/PrettySeriousResearcher | 2 | Claude Code, Codex | 17 | — |
| smallinaUCSD/growth-percentile-skill | 2 | Claude Code, Codex, OpenCode | 2 | 998 tok |
| bjhardcastle/nwb-mcp-server An MCP server for accessing NWB (Neurodata Without Borders) files, providing AI agents eas | 2 | Claude Code | 1 | — |
| FlowRegSuite/flowreg-agent-skills | 2 | Claude Code, Codex, OpenCode | 1 | 1,172 tok |
| not-a-feature/evo2-mcp evo2-mcp.readthedocs.io MCP server for generating, scoring and embedding genomic sequences using Evo 2 | 2 | GitHub Copilot | 1 | 230 tok |
| masa061580/enhanced-pubmed-mcp-server | 2 | Claude Code | 1 | 629 tok |
| kratsg/ami-mcp ami-mcp.readthedocs.io MCP Server for ATLAS AMI metadata interface | 2 | Claude Code | 1 | 3,405 tok |
| biocontext-ai/protocol-mcp Wet lab protocol retrieval MCP server, including protocols.io | 2 | Claude Code, Codex, OpenCode | 2 | 68 tok |
| NSF-Simons-CosmicAI-Institute/manna MCP server for NRAO (mostly ALMA) and NOIRLab data access | 2 | Claude Code | 1 | 3,236 tok |
| QINGMINGMIKU/protein-lab Local protein experiment management system — Flask + SQLite, with protein concentration ca | 2 | Claude Code | 3 | 8,578 tok |
| chokukil/timesfm-mcp MCP server for local GPU TimesFM forecasting | 2 | Codex, OpenCode | 1 | 150 tok |
| cyanheads/paleobiology-mcp-server npmjs.com Search fossil occurrences, resolve taxon fossil ranges, plot diversity through deep time, | 2 | Claude Code, Codex, OpenCode | 2 | 13,846 tok |
| tufantunc/axiom-advanced-math-mcp npmjs.com Exact symbolic math for LLMs: integrals, equations, matrices, and claim verification via G | 2 | Codex, OpenCode | 1 | 1,272 tok |
| keta1930/icml2026-mcp keta1930.github.io MCP server for session-aware hybrid search over 6,341 ICML 2026 papers | 1 | Claude Code, Codex, OpenCode | 2 | 977 tok |
| Tom409114/research-repo-doctor research-repo-doctor-bckncrcwwmg6jrbsrd6btj.streamlit.app Artifact Evaluation readiness checker for research code: static scan, safe fixes, verify l | 1 | Codex, GitHub Copilot, OpenCode | 2 | 1,043 tok |
| ashwinvis/scb-opendata-mcp An unofficial FastMCP server that provides access to Statistics Sweden's PxWebApi v2, offe | 1 | Codex, OpenCode | 1 | 750 tok |
| asokore/statcite statcite.com Official economic statistics for AI agents — every number with a full citation, plus verif | 1 | Claude Code, Gemini CLI | 2 | 2,618 tok |
| cyanheads/faostat-mcp-server npmjs.com Global food & agriculture statistics from the UN FAOSTAT bulk-download corpus, served from | 1 | Claude Code, Codex, OpenCode | 2 | 14,318 tok |
| cyanheads/calculator-mcp-server npmjs.com Evaluate, simplify, and differentiate mathematical expressions via MCP. STDIO or Streamabl | 1 | Claude Code, Codex, OpenCode | 2 | 12,660 tok |
| cyanheads/gnomad-genetics-mcp-server npmjs.com Ancestry allele frequencies, LoF constraint, variant lists, and coverage from gnomAD, join | 1 | Claude Code, Codex, OpenCode | 2 | 12,548 tok |
| cyanheads/bls-labor-mcp-server npmjs.com Fetch US Bureau of Labor Statistics data — CPI, unemployment, wages, JOLTS, and more via M | 1 | Claude Code, Codex, OpenCode | 2 | 11,150 tok |
| cyanheads/chembl-mcp-server npmjs.com Link compounds to protein targets, rank bioactivity (IC50/Ki/EC50), and look up drug mecha | 1 | Claude Code, Codex, OpenCode | 2 | 14,242 tok |
| dfieser/hea-bench dfieser.github.io Free high-entropy alloy (HEA) and high-entropy oxide calculator: mixing entropy, atomic-si | 1 | Claude Code, Codex, OpenCode | 2 | 7,698 tok |
| forever-healthy/evipedia-mcp MCP Server for evipedia.ai | 1 | Claude Code | 2 | — |