671 projects whose own agent configuration covers scientific. These are not mods to install — they are how the maintainers of these repositories tell an agent what to do, and what to avoid.
All projects Building agents7,374Claude Code6,573Data and AI3,706Backend and APIs3,486Languages3,398Planning3,181Git and workflow3,100Code review2,701Memory and context2,354Testing2,311Research2,292DevOps and cloud2,282
Any agent Claude CodeCodexOpenCodeGitHub CopilotGemini CLICursorWindsurfKiro
| Project | Stars | Configures | Files | Always loaded |
|---|---|---|---|---|
| gregario/3dprint-oracle 3D printing filament and materials knowledge MCP server | 1 | Claude Code | 1 | 280 tok |
| racehooks/racehooks-mcp racehooks.io MCP server for RaceHooks — F1 live timing tools for Claude, Cursor, and Windsurf | 1 | Codex, OpenCode | 1 | 792 tok |
| Mjvolk3/torchcell Datasets, transformations, and pretrained models for biological cellular systems. | 1 | Claude Code | 39 | 12,957 tok |
| pickleton89/mutation-clinical-trial-matching-mcp MCP server to query clinicaltrial.gov to identify mutation specific trials | 1 | Claude Code | 1 | 2,331 tok |
| synabreu/arxiv-wiki synabreu.github.io arxiv-wiki hosting services | 1 | Codex, OpenCode | 1 | 121 tok |
| mdfranz/saruca Mining Gemini CLI | 1 | Codex, Gemini CLI, OpenCode | 2 | 2,542 tok |
| MacromNex/alphafold3_mcp AlphaFold3 MCP server for protein structure prediction, supporting batch prediction | 1 | Claude Code | 1 | 1,023 tok |
| MGS-sails/mgnify-mcp - MGnify MCP Server implements the Model Context Protocol to expose MGnify’s metagenomic | 1 | Claude Code | 1 | — |
| luc-me/ltspiceMCP Un servidor MCP (Model Context Protocol) que permite a los LLMs diseñar y simular circuito | 1 | Gemini CLI | 1 | 981 tok |
| GadatheGod/freecad-mcp-pro Professional-grade FreeCAD MCP server enabling AI assistants to create parametric 3D model | 1 | Claude Code, OpenCode | 7 | — |
| riccardovietri/thermal-mcp-server | 1 | Claude Code, Codex, OpenCode | 2 | 2,257 tok |
| marfago/arxiv-sync-mcp-server A Model Context Protocol server for searching and analyzing arXiv papers | 1 | Claude Code | 1 | 571 tok |
| moxus/intervals-icu-mcp-ts MCP Server for intervals.icu | 1 | Claude Code, Codex, OpenCode | 2 | 1,239 tok |
| ruby0606/mcp-earthquake-server Global earthquake monitoring server via Model Context Protocol - IRIS, USGS, and GNSS inte | 1 | GitHub Copilot | 1 | 1,021 tok |
| SVerITG/Metis_PH A Research Cortex. A research companion for Claude. Your library, notes & memory stay on y | 1 | Claude Code, Codex, OpenCode | 43 | 9,723 tok |
| SachinGawande2003/Heuris-BioMCP BioMCP - Comprehensive MCP server for bioinformatics and life sciences | 1 | Claude Code | 1 | 988 tok |
| saitoomituru/PSYCHO-Py800MCP MCP bridge for oscilloscope, logic analyzer, and microscope automation. AI-driven waveform | 1 | Claude Code, Codex, OpenCode | 2 | 2,774 tok |
| biocontext-ai/nucleotide_archive_mcp European Nucleotide Archive dataset search MCP server for agentic RNA-sequencing data disc | 1 | Claude Code, Codex, OpenCode | 2 | 492 tok |
| scitex-ai/claude-code-telegrammer Custom Telegram MCP server + TUI auto-responder for Claude Code — 10 MCP tools, SQLite mes | 1 | Claude Code | 70 | — |
| feordin/nih-umls-mcp An MCP server that serves as a wrapper for the NIH UMLS Api | 1 | Claude Code | 1 | 629 tok |
| SourceShift/osf-mcp-server An MCP (Model Context Protocol) server for interacting with the [Open Science Framework (O | 1 | Claude Code | 1 | 892 tok |
| dna-seq/just-prs-mcp Just-PRS MCP server | 1 | Claude Code, Codex, OpenCode | 4 | 3,963 tok |
| florianbuetow/arxiv-smart-mcp MCP server for searching and reading arXiv papers from AI assistants — self-rate-limited t | 1 | Codex, OpenCode | 1 | 653 tok |
| Proprius-Labs/pocketscout-mcp An MCP server that aggregates structural, chemical, and literature data from UniProt, PDB, | 1 | Claude Code | 1 | 1,775 tok |
| Bonifatius94/myscrape Go port of myscrape — web-research MCP server (web_search/web_fetch/web_research) as a com | 1 | Claude Code | 3 | — |
| loumalouomega/Kratos-MCP-Server loumalouomega.github.io MCP server for Kratos Multiphysics | 1 | Claude Code | 1 | 4,237 tok |
| learningtour/chat-with-audio Chat with Audio — chat-driven audio enhancement (MCP + C++ DSP + A/B viewer). Part of Agen | 1 | Claude Code | 1 | 1,635 tok |
| fbereilh/cellar AI-agent-first interactive notebook environment (Jupyter-compatible, SvelteKit, MCP agent | 1 | Claude Code | 2 | 3 tok |
| prashant-cr/Clinic-front-desk-MCP-server AI receptionist for a small medical clinic, as an MCP server: appointment booking, resched | 1 | Claude Code | 1 | 2,018 tok |
| Happypig375/vscode-jupyter-mcp-server | 1 | Codex, OpenCode | 1 | 651 tok |
| hadidwirsty/intervals-icu-mcp | 1 | Claude Code, Codex | 2 | — |
| JulieElkinsAWS/psychometrics-mcp Classical test theory, differential item functioning, local item dependence and standard s | 1 | Claude Code | 1 | 6,023 tok |
| cyanheads/uniprot-mcp-server npmjs.com Search UniProtKB by protein function, fetch curated records, map IDs across databases, and | 1 | Claude Code, Codex, OpenCode | 2 | 13,062 tok |
| cyanheads/noaa-spaceweather-mcp-server npmjs.com Query NOAA SWPC space weather: geomagnetic storm scales, Kp index, aurora forecasts, solar | 1 | Claude Code, Codex, OpenCode | 2 | 10,296 tok |
| cyanheads/imf-mcp-server npmjs.com Query IMF SDMX 3.0 macroeconomic data — 193 dataflows, 190 countries, WEO projections, BOP | 1 | Claude Code, Codex, OpenCode | 2 | 13,090 tok |
| zamushwani/biomedical-ai-skills AI agent skills for cancer biology and multi-omics research | 1 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 3,531 tok |
| aliildan/cochrane-mcp MCP server for searching the Cochrane Library and fetching review/trial details. | 1 | Claude Code | 1 | 2,384 tok |
| ZiChenWang114514/cdxml-toolkit-community Community CDXML toolkit and MCP server. | 1 | Claude Code, Codex, OpenCode | 2 | 4,108 tok |
| 263311487-ux/falsify 263311487-ux.github.io The scientific thinking protocol for AI agents — falsify before you believe. 5-stage falsi | 1 | Claude Code, Codex, Cursor, OpenCode | 2 | 280 tok |
| eic/xrootd-mcp-server eic.github.io An MCP server that allows for querying XRootD servers by LLM agents. | 1 | Codex, GitHub Copilot, OpenCode | 2 | 3,032 tok |
| MOBAI547800/abaqus-codex-mcp Codex-ready local MCP server for safe Abaqus automation on Windows | 0 | Codex, OpenCode | 1 | 343 tok |
| colbyw5/openfda-mcp-server Python MCP server that gives AI assistants access to the U.S. Food and Drug Administration | 0 | Codex, OpenCode | 1 | 467 tok |
| awheeler262/qgis_mcp This project explores ways to interact with QGIS using the QGIS MCP Plugin and an MCP Serv | 0 | Claude Code | 1 | 1,635 tok |
| sandraschi/leanforge-mcp Lean theorem prover MCP: automated proof search, mathlib integration, job management | 0 | Claude Code, Codex, OpenCode | 2 | 1,889 tok |
| shoumikdc/arXiv-mcp smithery.ai A Model Context Protocol (MCP) server to fetch the latest research papers posted to the ar | 0 | Codex, OpenCode | 1 | 4,099 tok |
| Black-Swan-Causal-Labs/target-mcp | 0 | Claude Code | 1 | — |
| Bigred97/apra-mcp pypi.org Query the Australian Prudential Regulation Authority in plain English from Claude or any M | 0 | Claude Code | 4 | 446 tok |
| CSOAI-ORG/clinical-trials-ai-mcp Search clinical trials, evaluate eligibility, compare trials, and retrieve endpoint data. | 0 | Cursor | 1 | 82 tok |
| CSOAI-ORG/patient-safety-ai-mcp Check drug interactions, validate dosages, assess patient risk, and generate safety alerts | 0 | Cursor | 1 | 89 tok |
| KozakHou/project-bourne Universal experiment provenance and reproducibility for science and engineering. | 0 | Codex, OpenCode | 1 | 3,694 tok |