669 projects whose own agent configuration covers scientific. These are not mods to install — they are how the maintainers of these repositories tell an agent what to do, and what to avoid.
All projects Building agents7,410Claude Code6,578Data and AI3,695Backend and APIs3,487Languages3,404Planning3,188Git and workflow3,106Code review2,712Memory and context2,351Testing2,325Research2,289DevOps and cloud2,283
Any agent Claude CodeCodexOpenCodeGitHub CopilotGemini CLICursorWindsurfKiro
| Project | Stars | Configures | Files | Always loaded |
|---|---|---|---|---|
| huangzesen/xhelio-spice | 0 | Claude Code | 1 | 2,561 tok |
| islobodan/cruncher-mcp Cruncher MCP: The Scientific Calculator MCP Server | 0 | Codex, OpenCode | 1 | 1,968 tok |
| lonexreb/cite-guard pypi.org The free, open watchdog for retracted & problematic citations — Retraction Watch + OpenAle | 0 | Claude Code | 1 | 1,260 tok |
| lostnumber07/shearline Analyst-grade US severe-weather tools for AI agents over MCP: NWS warnings with IBW tags, | 0 | Claude Code | 3 | — |
| m2ai-mcp-servers/chartinghero MCP server for clinical charting with Claude — AI-powered visit documentation for home hea | 0 | Claude Code | 1 | 767 tok |
| mcpwright/soi-mcp MCP server for IRS Statistics of Income (SOI) data by ZIP — income, AGI distribution, tax, | 0 | Claude Code | 3 | 1,362 tok |
| rongchang726-png/vivarium A small world that evolves on its own (neural creatures under natural selection) — plus a | 0 | Claude Code | 1 | 2,205 tok |
| starfetch-js/starfetch Starfetch gives AI agents safe, reproducible access to public astronomy catalogs through t | 0 | Codex, OpenCode | 1 | 2,436 tok |
| cholhwanjung/research-mcp Claude Desktop research mcp server | 0 | Claude Code | 8 | — |
| zhangreling02-ai/3dslicer-claude-bridge MCP server bridging 3D Slicer with Claude Code for medical image analysis | 0 | Claude Code | 14 | 2,053 tok |
| Tom-R-Main/medgemma-mcp Deprecated — unmaintained MedGemma MCP research prototype; do not use clinically. | 0 | Claude Code | 1 | 629 tok |
| jsynowiec/mcp-server-airly An MCP server that integrates the Airly API, enabling natural language interaction with ai | 0 | Claude Code, Codex, OpenCode | 2 | 318 tok |
| Friedemann12/paper-mcp | 0 | Claude Code | 2 | — |
| numa08/noaa-space-weather-mcp NOAA space weather data MCP server for amateur radio operators — HF propagation analysis t | 0 | Claude Code | 1 | 1,259 tok |
| shuji-bonji/epsg-mcp npmjs.com An MCP server that provides knowledge about Coordinate Reference Systems (CRS). | 0 | Claude Code | 1 | 584 tok |
| anshika1109/calculator-mcp-server Calculator with Java GUI and MCP server with authentication | 0 | Claude Code, Kiro | 1 | — |
| MacromNex/esmfold_mcp ESMFold MCP server for protein structure prediction | 0 | Claude Code | 1 | 805 tok |
| MacromNex/spired_stab_mcp SPIRED-Stab MCP server for protein stability prediction | 0 | Claude Code | 1 | 856 tok |
| PrisonBreakPB/control-science-literature-mcp A read-only MCP server for Control Science and Engineering literature search. | 0 | Claude Code, Codex | 1 | — |
| red-cars-io/clinical-trials-mcp | 0 | Claude Code, Codex, OpenCode | 2 | 5,985 tok |
| u9401066/rootcause-mcp Clinical Root Cause Analysis MCP Server - AI-guided structured RCA with Fishbone (6M), 5-W | 0 | Claude Code, Codex, GitHub Copilot, OpenCode | 51 | 4,716 tok |
| nickzren/mygene-mcp MCP server for MyGene.info API | 0 | Claude Code, Codex, OpenCode | 2 | 590 tok |
| flyearth9981/matlab-mcp-server Matlab MCP Server in python | 0 | Claude Code | 1 | — |
| iflow-mcp/subspace-lab-matlab-mcp-server Matlab MCP Server in python | 0 | Claude Code | 1 | — |
| u9401066/academic-figures-mcp Academic figure generation MCP server for AI agents — turn papers into publication-ready m | 0 | Claude Code, Codex, GitHub Copilot, OpenCode | 43 | 2,813 tok |
| AiAgentKarl/space-mcp-server MCP server for NASA space data — Astronomy, Mars Rovers, Asteroids, Earth imagery, Exoplan | 0 | Claude Code | 1 | 312 tok |
| Yaeshio/FreeCAD-MCP-For-YDGA | 0 | Claude Code | 3 | — |
| KrishnaKakani-GitHub/clinical-ai-governance-platform | 0 | Claude Code | 1 | 982 tok |
| surajinacademia/cellpose_mcp MCP tools for Cellpose and napari integration | 0 | Claude Code | 1 | 678 tok |
| fc0web/lab-notebook-mcp Experimental notes MCP server — a shared primary-source layer connecting benchtop (measure | 0 | Claude Code | 1 | 808 tok |
| AbiyuLingga/LTSpice-MCP | 0 | Claude Code, Codex, OpenCode | 2 | 4,454 tok |
| tetracoralla/math-anchor Math Anchor — safe exact and scientific math, units, and dimensional analysis for humans a | 0 | Claude Code, Codex, OpenCode | 2 | 484 tok |
| puran-water/anaerobic-design-mcp Consolidated into PuranOS — see github.com/puran-water/puranos-public | 0 | Claude Code | 1 | 4,863 tok |
| ShreeMulay/autoresearch-mcp MCP server for autoresearch technique discovery and experiment tracking. Inspired by Karpa | 0 | Codex, OpenCode | 1 | 524 tok |
| MacromNex/rosetta_mcp Rosetta MCP server for molecular modeling and protein design | 0 | Claude Code | 1 | 942 tok |
| EricYuan2007/GPUPlane Agent-native training control plane for personal GPUs — personal GPU training control plan | 0 | Claude Code, Codex, OpenCode | 5 | 3,555 tok |
| BIH-CEI/zotero-comfort Comfort layer for Zotero MCP integration with high-level research workflows | 0 | Claude Code, Codex, OpenCode | 2 | 333 tok |
| l4b4r4b4b4/science-mcp | 0 | GitHub Copilot | 1 | 708 tok |
| MacromNex/chai1_mcp Chai-1 MCP server for protein structure prediction | 0 | Claude Code | 1 | 739 tok |
| tyson-swetnam/gbif-mcp Model Context Protocol (MCP) server providing programmatic access to GBIF biodiversity dat | 0 | Claude Code | 2 | 1,607 tok |
| san-rat/latex-mcp MCP server for LLM-driven LaTeX compile/inspect loops via Overleaf's CLSI, with a web UI | 0 | Claude Code | 1 | 1,684 tok |
| dfieser/lcf-strain-life dfieser.github.io AI-agent-native low cycle fatigue strain-life analysis. Python library plus MCP server: re | 0 | Claude Code, Codex, OpenCode | 3 | 2,570 tok |
| miguel-escribano/openair-3-mcp-server-oss Open-source MCP server for the openair R package — CSV/Excel ingest, AURN/EU import, publi | 0 | Claude Code | 1 | 1,023 tok |
| soundwaverohit/quantum-research-hub Local-first autonomous quantum computing research lab powered by MCP, Claude, and Streamli | 0 | Claude Code | 14 | 2,736 tok |
| FreddieWho/SearchPaper Local stdio MCP server that gives Claude Code, OpenCode, and Codex structured, citable acc | 0 | Claude Code, Codex | 1 | — |
| jesse-smith/searchloinc Thin MCP server wrapping the LOINC Search API so LLMs can search LOINC like the loinc.org/ | 0 | Claude Code | 4 | 1,019 tok |
| MOBAI547800/abaqus-mcp-server MCP server for Abaqus FEM automation — model generation, job submission, log monitoring, a | 0 | Claude Code | 1 | 716 tok |
| jbwod/CASDA-MCP Model Context Protocol server for the CSIRO ASKAP Science Data Archive (CASDA). It convert | 0 | Cursor | 4 | — |
| Oekalegon/indi-mcp An MCP server that controls Astrophotography equipment via INDI on a raspberry pi or equiv | 0 | Claude Code | 1 | — |
| namJeongwan/suparch An open-source MCP server for searching, comparing, and calculating supplement facts. | 0 | Codex, OpenCode | 1 | 63 tok |