544 projects whose own agent configuration covers scientific. These are not mods to install — they are how the maintainers of these repositories tell an agent what to do, and what to avoid.
All projects Building agents7,412Data and AI4,299Backend and APIs3,694Languages3,682Planning3,492Git and workflow3,285Code review2,942Memory and context2,581Research2,499Writing and docs2,458Testing2,454Frontend2,420
Any agent Claude CodeCodexOpenCodeGitHub CopilotGemini CLICursorKiroWindsurf
| Project | Stars | Configures | Files | Always loaded |
|---|---|---|---|---|
| helixnow/deep-student deepstudent.cn An open-source, local-first AI learning workbench | 261 | Claude Code, Codex | 2 | — |
| xucao-42/bilateral_normal_integration Official implementation of "Bilateral Normal Integration" (BiNI), ECCV 2022. | 245 | Claude Code, Codex, OpenCode | 2 | 1,838 tok |
| romovpa/claudini arxiv.org Autoresearch for LLM adversarial attacks | 241 | Claude Code | 2 | 1,257 tok |
| ProjectDXAI/labrat dxrg.ai Autonomous multi-branch research lab. Branches compete for compute budget. The system conv | 239 | Claude Code, Codex, OpenCode | 3 | 1,280 tok |
| maxwell2732/codex-stata-for-economists A Codex Stata pipeline for Economists by 朱晨 | Genetic Social Science Research. | 238 | Claude Code, Codex, OpenCode | 33 | 5,263 tok |
| isbeorn/nina nighttime-imaging.eu N.I.N.A. (Nighttime Imaging 'N' Astronomy) - Advanced astrophotography sequencing software | 232 | Claude Code, Codex, OpenCode | 3 | 2,705 tok |
| microsoft/P.808 This is an open-source implementation of the ITU P.808 standard for "Subjective evaluation | 230 | Claude Code, Codex, GitHub Copilot, OpenCode | 6 | 1,712 tok |
| RealSeaberry/AutoMCM-Pro Full-stack automated mathematical modeling competition Skill, supporting Claude Code / Cod | 221 | Claude Code, Codex | 4 | — |
| svd-ai-lab/sim-cli Turn existing CAE files into structured text an agent can use — COMSOL, Abaqus, Fluent, HF | 214 | Claude Code | 1 | 4,423 tok |
| ab604/claude-code-r-skills Claude Code configurations for R development. | 198 | Claude Code | 9 | — |
| dualverse-ai/station dualverse.ai The Station is an open-world multi-agent environment where AI agents pursue autonomous sci | 185 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 7,604 tok |
| yusong652/itasca-mcp pypi.org MCP server connecting AI agents to ITASCA engines (PFC, FLAC, 3DEC, MPoint, MassFlow) — ru | 173 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 4,770 tok |
| Learning-Bayesian-Statistics/baygent-skills A set of skills to call your agent Bayes. Thomas Bayes. | 172 | Claude Code | 1 | 1,343 tok |
| pachterlab/paperpush | 163 | Claude Code, Codex, OpenCode | 3 | 2,328 tok |
| learningmatter-mit/AtomisticSkills arxiv.org Intergrating Atomistic Skills into Agentic IDEs (Cursor, Claude Code, Google Antigravity, | 161 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 1,946 tok |
| NVIDIA/nvalchemi-toolkit nvidia.github.io ALCHEMI Toolkit is a developer toolkit for accelerating training and inference for AI in c | 159 | Claude Code, Codex, OpenCode | 2 | 2,751 tok |
| notlate-cn/code-reader-skills 🧠 Cognitive science-based Claude Skills for deep code understanding | Tools for deep sour | 153 | Claude Code | 1 | 1,118 tok |
| equinor/neqsim equinor.github.io NeqSim is a library for calculation of fluid behavior, phase equilibrium and process simul | 150 | Claude Code, Codex, GitHub Copilot, Cursor, OpenCode, Windsurf | 6 | 34,717 tok |
| jaccen/Awesome-Gaussian-Skills jaccen.github.io Continuously updated papers on computer graphics, 3DGS, and spatial intelligence; AI Agent | 149 | Claude Code | 1 | 4,890 tok |
| cyanheads/pubmed-mcp-server npmjs.com Search PubMed/Europe PMC, fetch articles and full text (PMC/EPMC/Unpaywall), citations, Me | 146 | Claude Code, Codex, OpenCode | 2 | 12,582 tok |
| tobiasosborne/alethfeld Rigorous Proofs via Adversarial AI Agents | 144 | Claude Code, Codex, OpenCode | 13 | 444 tok |
| softnanolab/bagel Protein Engineering via Exploration of an Energy Landscape | 143 | Claude Code | 2 | — |
| HarleyCoops/KimiK3Manim Create epic math and physics explainer animations with Kimi K3. | 142 | Claude Code | 1 | 2,144 tok |
| goodfire-ai/param-decomp Parameter Decomposition | 142 | Claude Code | 1 | 504 tok |
| joshzyj/open-scholar-skill Open scholar skill, a claude code plugin, for academic research | 140 | Claude Code | 57 | 3,613 tok |
| Netflix-Skunkworks/oci-agent | 137 | Claude Code | 1 | 143 tok |
| maxwell2732/paper-replicate-agent-demo A structured Claude Code workflow for empirically replicating published research using UK | 134 | Claude Code | 21 | 933 tok |
| crazyhottommy/pyflow-ChIPseq a snakemake pipeline to process ChIP-seq files from GEO or in-house | 133 | Claude Code | 1 | 3,855 tok |
| psu-efd/pyHMT2D Python Hydraulic Modeling Tools - 2D | 130 | Claude Code, Codex, OpenCode | 11 | 2,924 tok |
| NVlabs/ASPIRE ASPIRE: Agentic /Skills Discovery for Robotics | 127 | Claude Code, Codex, OpenCode | 2 | 1,405 tok |
| iancanderson/openscad-agent A Claude Code-powered 3D modeling agent environment for creating 3D printable designs usin | 126 | Claude Code | 4 | 810 tok |
| CliMA/ClimaAtmos.jl clima.github.io GPU-capable global atmosphere model of the CliMA Earth System Model, designed for calibrat | 126 | Claude Code, Codex, GitHub Copilot, OpenCode | 3 | 905 tok |
| xingwudao/open-xquant xingwudao.github.io AI quantitative research framework: AI Agent-driven strategy backtesting, factor research, | 126 | Claude Code, Codex, OpenCode | 2 | 1,019 tok |
| voidful/academic-skills A complete academic research Skill suite. Supports Claude Code, ChatGPT / Codex CLI, and G | 126 | Claude Code | 1 | 709 tok |
| DrugClaw/DrugClaw drugclaw.com 💊 AI Research Assistant for Accelerated Drug Discovery. 🦞 | 125 | Claude Code, Codex, OpenCode | 2 | 3,050 tok |
| evo-design/proto-tools proto.evodesign.org A universal infrastructure layer for generative biology | 125 | Claude Code, Codex, Gemini CLI, OpenCode | 5 | 1,593 tok |
| CliMA/EnsembleKalmanProcesses.jl clima.github.io Derivative-free parameter calibration and uncertainty quantification for expensive models | 124 | Claude Code | 8 | — |
| dreadnode/agent-lens dreadnode.github.io Agent observability and replay tooling for AI safety & interpretability research. | 115 | Claude Code, Codex | 2 | 2,762 tok |
| 001TMF/blatant-why AI-powered biologics design campaign agent — multi-agent orchestration with BoltzGen, PXDe | 114 | Claude Code | 6 | 634 tok |
| diegoscarabelli/garmin-health-data pypi.org A simple Python CLI to download Garmin Connect data as local files and load them into a SQ | 114 | Claude Code | 1 | 1,240 tok |
| share-skills/pi share-skills.github.io PI（π）—— When The Art of War Meets Cognitive Science for Ai | 108 | Claude Code | 1 | 409 tok |
| wybert/earth-agent-chrome-ext Earth Agent is a Cursor-like AI agent for Google Earth Engine. It can be used right in you | 104 | Claude Code, Gemini CLI | 2 | 965 tok |
| olibartfast/neuriplo-infer C++ app for computer vision inference, supporting multiple tasks and backends. | 103 | Claude Code, Codex, GitHub Copilot, OpenCode | 3 | 2,281 tok |
| potatobeanradio/circuitRF Lightweight cross-platform RF circuit simulator — DC, S-parameters, harmonic balance, load | 103 | Claude Code | 1 | 9,876 tok |
| fl-sean03/OpenSDL seanflorez.com A modular Python foundation for reproducible computational and autonomous laboratories. Al | 102 | Claude Code, Codex, OpenCode | 13 | 921 tok |
| cmu-phil/py-tetrad Makes algorithms/code in Tetrad available in Python via JPype | 99 | Claude Code | 2 | 1,020 tok |
| xd-liu/AutoResearch-Idea | 99 | Claude Code | 11 | 2,294 tok |
| aws-samples/aws-hpc-recipes Contains example recipes that demonstrate how to build HPC systems using AWS services and | 97 | Claude Code, Codex, OpenCode | 2 | 1,033 tok |
| eunomia-bpf/ActPlane eunomia.dev eBPF Information Flow Enforcement for AI Agent safety, security and effectiveness | 97 | Claude Code, Codex, OpenCode | 6 | 2,205 tok |
| gokeshenzhen/TraceWeave A universal MCP Server for test platform logs, waveforms (FSDB/VCD), and root cause analys | 97 | Claude Code, Codex, OpenCode | 2 | 8,348 tok |