330 projects whose own agent configuration covers scientific. These are not mods to install — they are how the maintainers of these repositories tell an agent what to do, and what to avoid.
All projects Building agents7,412Data and AI4,299Backend and APIs3,694Languages3,682Planning3,492Git and workflow3,285Code review2,942Memory and context2,581Research2,499Writing and docs2,458Testing2,454Frontend2,420
Any agent Claude CodeCodexOpenCodeGitHub CopilotGemini CLICursorKiroWindsurf
| Project | Stars | Configures | Files | Always loaded |
|---|---|---|---|---|
| sweetcornna/mathodology Math modeling Agent Skills designed for mathematical modeling competitions: MCM/ICM, CUMCM | 172 | Codex, OpenCode | 1 | 884 tok |
| pachterlab/paperpush | 163 | Claude Code, Codex, OpenCode | 3 | 2,328 tok |
| learningmatter-mit/AtomisticSkills arxiv.org Intergrating Atomistic Skills into Agentic IDEs (Cursor, Claude Code, Google Antigravity, | 161 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 1,946 tok |
| NVIDIA/nvalchemi-toolkit nvidia.github.io ALCHEMI Toolkit is a developer toolkit for accelerating training and inference for AI in c | 159 | Claude Code, Codex, OpenCode | 2 | 2,751 tok |
| equinor/neqsim equinor.github.io NeqSim is a library for calculation of fluid behavior, phase equilibrium and process simul | 150 | Claude Code, Codex, GitHub Copilot, Cursor, OpenCode, Windsurf | 6 | 34,717 tok |
| cyanheads/pubmed-mcp-server npmjs.com Search PubMed/Europe PMC, fetch articles and full text (PMC/EPMC/Unpaywall), citations, Me | 146 | Claude Code, Codex, OpenCode | 2 | 12,582 tok |
| tobiasosborne/alethfeld Rigorous Proofs via Adversarial AI Agents | 144 | Claude Code, Codex, OpenCode | 13 | 444 tok |
| psu-efd/pyHMT2D Python Hydraulic Modeling Tools - 2D | 130 | Claude Code, Codex, OpenCode | 11 | 2,924 tok |
| NVlabs/ASPIRE ASPIRE: Agentic /Skills Discovery for Robotics | 127 | Claude Code, Codex, OpenCode | 2 | 1,405 tok |
| CliMA/ClimaAtmos.jl clima.github.io GPU-capable global atmosphere model of the CliMA Earth System Model, designed for calibrat | 126 | Claude Code, Codex, GitHub Copilot, OpenCode | 3 | 905 tok |
| xingwudao/open-xquant xingwudao.github.io AI quantitative research framework: AI Agent-driven strategy backtesting, factor research, | 126 | Claude Code, Codex, OpenCode | 2 | 1,019 tok |
| DrugClaw/DrugClaw drugclaw.com 💊 AI Research Assistant for Accelerated Drug Discovery. 🦞 | 125 | Claude Code, Codex, OpenCode | 2 | 3,050 tok |
| evo-design/proto-tools proto.evodesign.org A universal infrastructure layer for generative biology | 125 | Claude Code, Codex, Gemini CLI, OpenCode | 5 | 1,593 tok |
| genggng/hermes-arxiv-agent genggng.github.io An agent skill based on Hermes: automatically fetches papers from arXiv daily, uses AI to | 119 | Codex, OpenCode | 1 | 2,050 tok |
| nudt-sawlab/PiLoT Code for "PiLoT: Neural Pixel-to-3D Registration for UAV-based Ego and Target Geo-localiza | 113 | Codex, OpenCode | 1 | 1,239 tok |
| celeritas-project/celeritas celeritas-project.github.io Celeritas is a new Monte Carlo transport code designed to accelerate scientific discovery | 105 | Codex, OpenCode | 1 | 2,452 tok |
| olibartfast/neuriplo-infer C++ app for computer vision inference, supporting multiple tasks and backends. | 103 | Claude Code, Codex, GitHub Copilot, OpenCode | 3 | 2,281 tok |
| fl-sean03/OpenSDL seanflorez.com A modular Python foundation for reproducible computational and autonomous laboratories. Al | 102 | Claude Code, Codex, OpenCode | 13 | 921 tok |
| aws-samples/aws-hpc-recipes Contains example recipes that demonstrate how to build HPC systems using AWS services and | 97 | Claude Code, Codex, OpenCode | 2 | 1,033 tok |
| eunomia-bpf/ActPlane eunomia.dev eBPF Information Flow Enforcement for AI Agent safety, security and effectiveness | 97 | Claude Code, Codex, OpenCode | 6 | 2,205 tok |
| gokeshenzhen/TraceWeave A universal MCP Server for test platform logs, waveforms (FSDB/VCD), and root cause analys | 97 | Claude Code, Codex, OpenCode | 2 | 8,348 tok |
| joelreymont/pz Minimal pi coding-agent re-implementation in Zig | 95 | Claude Code, Codex, OpenCode | 6 | 1,186 tok |
| CliMA/Thermodynamics.jl clima.github.io Fast, differentiable moist thermodynamics for Earth system models. | 93 | Codex, OpenCode | 1 | 699 tok |
| cyanheads/clinicaltrialsgov-mcp-server npmjs.com Search ClinicalTrials.gov trials, retrieve study details and results, and match patients t | 91 | Claude Code, Codex, OpenCode | 2 | 11,808 tok |
| iLearn-Lab/ACL25-AdaReTaKe Official implementation of paper AdaReTaKe: Adaptive Redundancy Reduction to Perceive Long | 91 | Codex, OpenCode | 1 | 2,221 tok |
| Dicklesworthstone/brenner_bot brennerbot.org Harness the scientific methods of Sydney Brenner using AI Agents | 90 | Codex, OpenCode | 1 | 6,951 tok |
| tensorcircuit/tensorcircuit-ng tensorcircuit-ng.readthedocs.io Next-gen AI-native tensor-network-based quantum software framework | 89 | Claude Code, Codex, OpenCode | 12 | 1,294 tok |
| Ayueh0102/Ronnier-skill Comprehensive Chinese study notes on color science/colorimetry, packaged as a Claude Code | 88 | Codex, OpenCode | 1 | 2,042 tok |
| 0xSanei/darwinia colab.research.google.com The Self-Evolving Agent Ecosystem — Trading agents that evolve through Darwinian selection | 87 | Claude Code, Codex, OpenCode | 3 | 1,631 tok |
| Routhleck/myNotes routhleck.github.io Software Engineering course notes from Beijing Jiaotong University | 86 | Codex, OpenCode | 1 | 681 tok |
| jmrplens/TFG-TFM_EPS jmrp.io Plantilla LaTeX para la elaboración de TFG y TFM en la Escuela Politécnica Superior de la | 84 | Claude Code, Codex, GitHub Copilot, OpenCode | 3 | 11,314 tok |
| tririver/arc Agent Research Copilot (ARC) is a set of skills and tools (CLI) for theoretical physics li | 83 | Codex, OpenCode | 1 | 3,116 tok |
| Lambenthan/empiricalwiki AI knowledge base for empirical research in economics and management — a complete pipeline | 82 | Claude Code, Codex, OpenCode | 31 | 4,874 tok |
| zxyasfas/paper_format_agent DOCX formatter for academic papers with a content-fingerprint guard: proves your text is n | 80 | Codex, OpenCode | 1 | 210 tok |
| gpt-cmdr/ras-commander clbengineering.com The RAS-Commander library provides a python API and agentic features for automating HEC-RA | 79 | Claude Code, Codex, OpenCode | 71 | 2,986 tok |
| jaylfc/taosmd Local-first AI memory — runs offline on any machine with 8 GB+ RAM (SBC, mini PC, laptop, | 77 | Claude Code, Codex, OpenCode | 3 | 3,177 tok |
| AMD-AGI/Apex Agents, and RL environment, for optimizing GPU kernels on AMD ROCm using LLM agents. Bench | 76 | Claude Code, Codex, OpenCode | 2 | 19,966 tok |
| dermatologist/pyomop nuchange.ca Python package for managing OHDSI clinical data models. Includes support for LLM based pla | 66 | Claude Code, Codex, OpenCode | 2 | 551 tok |
| ALBDNDJ/hpcguard A user-space safety net that helps researchers prevent AI agents from overloading shared H | 65 | Codex, OpenCode | 1 | 509 tok |
| monarch-initiative/dismech dismech.monarchinitiative.org Disease Mechanisms KB | 57 | Claude Code, Codex, GitHub Copilot, OpenCode | 29 | 39,339 tok |
| armpro24-blip/cad-cae-copilot CAD/CAE Copilot — an AI-native CAD/CAE/CAX workbench for AI agents. Text-to-CAD, text-to-C | 56 | Claude Code, Codex, GitHub Copilot, OpenCode | 3 | 36,119 tok |
| quantskills/agent-quantspace AI-native quantitative research framework | 56 | Claude Code, Codex, OpenCode | 2 | 2,304 tok |
| fuwenhao12/academic-ref-inserter | 55 | Claude Code, Codex, GitHub Copilot, Cursor, Gemini CLI, OpenCode | 6 | 3,753 tok |
| fastlmm/FaST-LMM fastlmm.github.io Python version of Factored Spectrally Transformed Linear Mixed Models | 55 | Claude Code, Codex, OpenCode | 2 | 1,540 tok |
| CliMA/CloudMicrophysics.jl clima.github.io GPU-capable cloud microphysics and aerosol parameterizations for the CliMA Earth System Mo | 55 | Codex, OpenCode | 1 | 989 tok |
| vlasenkoalexey/tpu_performance_autoresearch_wiki vlasenkoalexey.github.io Wiki built using Karpathy method containing information about TPU performance optimization | 54 | Claude Code, Codex, Gemini CLI, OpenCode | 21 | 1,427 tok |
| openmodelingfoundation/openmodelingfoundation.github.io openmodelingfoundation.org Website for standards and governance of the Open Modeling Foundation | 53 | Claude Code, Codex, GitHub Copilot, OpenCode | 3 | 692 tok |
| MikkoVihtakari/ggOceanMaps Plot oceanographic research data on maps using ggplot2 | 53 | Claude Code, Codex, OpenCode | 2 | 5,032 tok |
| whanyu1212/QuantRL-Lab whanyu1212.github.io Reinforcement Learning Testbed for Quantitative Trading | 53 | Claude Code, Codex, OpenCode | 2 | 6,821 tok |
| wanghao9610/STAR wanghao9610.github.io STAR: Systematic Toolchain for AI Research (Harness, WIP) | 51 | Claude Code, Codex, OpenCode | 27 | 1,754 tok |