341 projects whose own agent configuration covers scientific. These are not mods to install — they are how the maintainers of these repositories tell an agent what to do, and what to avoid.
All projects Building agents7,374Claude Code6,573Data and AI3,706Backend and APIs3,486Languages3,398Planning3,181Git and workflow3,100Code review2,701Memory and context2,354Testing2,311Research2,292DevOps and cloud2,282
Any agent Claude CodeCodexOpenCodeGitHub CopilotGemini CLICursorWindsurfKiro
| Project | Stars | Configures | Files | Always loaded |
|---|---|---|---|---|
| ZHANG-923-ZE/origin-MCP Configure MCP to call Origin on opencode for image generation. | 7 | Codex, OpenCode | 1 | 6,584 tok |
| weinaike/galaxy_morphology_mcp Galaxy Morphology Tools MCP Server | 7 | Claude Code, Codex, OpenCode | 4 | 5,402 tok |
| viplee110/economics-paper-reviewer Portable AI pre-review skill for economics papers across Codex, Claude Code, Cursor, and o | 7 | Claude Code, Codex, OpenCode | 2 | 425 tok |
| malekokour/clinpharm-pmx-skills malekokour.github.io Turn any AI agent into a clinical pharmacologist and pharmacometrician. It reviews, reconc | 6 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 1,501 tok |
| PancrePal-xiaoyibao/VitaForge VitaForge | Life Workshop — an AI4S dry-lab engine focused on general medicine and the bro | 6 | Claude Code, Codex, Gemini CLI, OpenCode | 56 | 3,171 tok |
| Sounio-lang/sounio sounio.vercel.app Self-hosted systems + scientific programming language with epistemic types, uncertainty pr | 6 | Claude Code, Codex, GitHub Copilot, Cursor, OpenCode | 12 | 15,060 tok |
| LoftyTao/ladybug-tools-mcp Ladybug Tools MCP core publish repository | 6 | Codex | 1 | — |
| spyrosze/mcp-openfoodtox phoebeai.com MCP server providing tools to access EFSA's comprehensive OpenFoodTox Chemical Hazards in | 5 | Codex, OpenCode | 1 | 6,574 tok |
| lachlanchen/AgInTi-LabCanvas lazying.art AgInTi LabCanvas: agentic studio for editable scientific figures, CAD devices, and experim | 5 | Codex, OpenCode | 1 | 9,085 tok |
| HERRY423/CellTypePilot Agent-native, local-first plugin for auditable single-cell annotation with governed eviden | 5 | Claude Code, Codex, OpenCode | 1 | 4,451 tok |
| sergiorbk/petri-net-sim An editor, a simulator, and a natural-language generator for Petri nets and Petri-object m | 5 | Claude Code, Codex, OpenCode | 6 | 1,625 tok |
| BioSymphony/cryocore Cryo-EM workflows for maps, models, figures, state comparison, and local or cloud compute | 5 | Codex, OpenCode | 1 | 945 tok |
| WolfpackOfOne/Q-agent wolfpackofone.github.io Agentic quantitative research framework for data pipelines, notebooks, and trading strateg | 5 | Claude Code, Codex, OpenCode | 25 | 5,903 tok |
| Steffen025/pag-extract Kongressprogramme als Datei statt 40 Browser-Tabs — liest das öffentliche Programm jedes m | 5 | Claude Code, Codex, GitHub Copilot, OpenCode | 4 | 1,767 tok |
| paperzilla-ai/paperzilla-skills Paperzilla Agent skills for OpenClaw, Claude Cowork/Code, Codex, ... | 5 | Codex, OpenCode | 1 | 33 tok |
| johnmwangimegwe/kenya-climate-agent Reasoning Over Earth Engine: An AI Agent for Kenya's Climate Risk | 5 | Codex, OpenCode | 1 | 1,057 tok |
| aeren23/image-processing-skills Decision-focused SKILL.md files for AI coding agents working on computer vision projects. | 5 | Codex, OpenCode | 1 | 324 tok |
| boettiger-lab/data-workflows Dataset processing workflows for cloud-native geospatial data on NRP Kubernetes | 5 | Claude Code, Codex, GitHub Copilot, OpenCode | 12 | 9,216 tok |
| wafertools/wafermap wafertools.github.io Interactive wafer map visualization and yield analysis for semiconductor test data. Render | 5 | Codex, OpenCode | 1 | 2,904 tok |
| Azure-Samples/AzureML_industry_labs azure-samples.github.io A collection of industry-focused Azure Machine Learning samples | 5 | Codex, OpenCode | 1 | 2,921 tok |
| hgaddipati1118/slop-index The Slop Index: a benchmark ranking frontier LLMs by how much AI slop their writing contai | 5 | Claude Code, Codex, OpenCode | 2 | 1,981 tok |
| brainets/braina Brain Interaction Analysis | 5 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 3,362 tok |
| yy6768/tiny-cutlass | 5 | Claude Code, Codex, OpenCode | 3 | 811 tok |
| construo-game/construo construo.github.io A simple 2D physics construction toy | 5 | Codex, OpenCode | 1 | 2,337 tok |
| awegroup/AWETrim Quasi-steady simulations of soft kites. Aerodynamics, aero-structural, optimization, exper | 5 | Codex, OpenCode | 1 | 2,181 tok |
| amenti-labs/hermes-lab File-first autonomous experiment scaffolding for long-running research controlled by AI ag | 5 | Codex, OpenCode | 1 | 510 tok |
| BoundaryML/baml-skills-demo How to integrate SKILLS.md into a BAML agent | 5 | Claude Code, Codex | 2 | — |
| Wuxb02/medi-agent-swarm Multi-agent intelligent Q&A assistant / skill-agent capability integration / three-layer m | 5 | Claude Code, Codex, OpenCode | 11 | 7,932 tok |
| cyanheads/protein-mcp-server npmjs.com Federated protein structure & annotation across experimental (PDB) and predicted (AlphaFol | 5 | Claude Code, Codex, OpenCode | 2 | 13,668 tok |
| mehdiforoozandeh/crux mehdiforoozandeh.github.io A scientific-method lab notebook your AI agent drives — research as a tree of questions an | 5 | Codex, OpenCode | 1 | 586 tok |
| mattmohandiss/cad-mcp-server npmjs.com MCP server for AI-assisted STEP CAD inspection, geometry queries, PMI hints, and revision | 4 | Codex, OpenCode | 1 | 1,765 tok |
| SPYfighting/my-academic-skills Agent skills for research work. Gated, human-in-the-loop protocols where every expert judg | 4 | Claude Code, Codex, OpenCode | 2 | 1,537 tok |
| MrSGSA/math-modeling-skill-dify A mathematical modeling Agent Skill and Dify Jiuku multimodal MCP bridge that can be dragg | 4 | Claude Code, Codex, OpenCode | 2 | 881 tok |
| EBISPOT/GrEBI HPC aggregation pipeline and API/MCP server for LLM-mediated biomedical data integration | 4 | Codex, OpenCode | 1 | 271 tok |
| u9401066/nsforge-mcp Neurosymbolic Forge — an MCP server that turns concepts into verifiable, traceable formula | 4 | Claude Code, Codex, GitHub Copilot, OpenCode | 23 | 5,925 tok |
| 45ck/open-genome-agent Local-first DNA and VCF analysis copilot for evidence-bound genomics workflows, confidence | 4 | Claude Code, Codex, OpenCode | 22 | 1,422 tok |
| Rebell-Leader/SpatialAI_MCP Empowering spatial transcriptomics research by providing AI agents with a standardized int | 4 | Claude Code, Codex, GitHub Copilot, Gemini CLI, OpenCode | 8 | 9,039 tok |
| agtm1199/uber-polya agtm1199.github.io A universal problem-solving skill for code agents (e.g. Claude, Codex), inspired by George | 4 | Claude Code, Codex, GitHub Copilot, OpenCode | 3 | 3,214 tok |
| codeprimate/math-mcp MCP server providing symbolic mathematics for Cursor AI and Claude Desktop. Solve equation | 4 | Codex, OpenCode | 1 | 1,069 tok |
| isaaccorley/planetary-computer-mcp A MCP Server for querying and downloading satellite imagery from the Planetary Computer ST | 4 | Codex, OpenCode | 1 | 1,493 tok |
| aws-samples/sample-laboratory-data-transformation-mcp | 4 | Claude Code, Codex | 1 | — |
| Cadasto/openehr-assistant-plugin cadasto.github.io openEHR assistant AI plugin suite with Skills, commands, and MCP server configuration for | 4 | Claude Code, Codex, GitHub Copilot, OpenCode | 3 | 6,386 tok |
| vantasnerdan/substrate-framework Claim-governed, agentic workflow for substrate physics framework | 4 | Codex, OpenCode | 5 | 13,122 tok |
| StepFunctionLLC/mcp-server-cantera An MCP server wrapped around Cantera to facilitate use by an LLM | 4 | Claude Code, Codex, GitHub Copilot, OpenCode | 3 | 2,463 tok |
| panoptes/panoptes-utils panoptes.github.io A set of Astronomical utility functions. PANOPTES style. :hammer_and_wrench: :telescope: : | 4 | Codex, GitHub Copilot, Gemini CLI, OpenCode | 3 | 8,008 tok |
| tkpratardan/lemma AI harness for DS/ML workflows. | 3 | Codex, GitHub Copilot, OpenCode | 2 | 558 tok |
| cyanheads/brapi-mcp-server npmjs.com A collaborative BrAPI v2.1 workspace for multi-agent research via MCP. Search studies, ger | 3 | Claude Code, Codex, OpenCode | 2 | 16,236 tok |
| edithatogo/mchs edithatogo.github.io Software tools for IHACPA National Weighted Activity Unit microcosting and health-service | 3 | Codex, OpenCode | 1 | 86 tok |
| rcsb/rcsb-mcp MCP server for RCSB PDB APIs | 3 | Codex, OpenCode | 1 | 1,495 tok |
| totonga/odsbox-jaquel-mcp MCP server to work with odsbox to access ASAM ODS HTTP API. | 3 | Codex, OpenCode | 1 | 63 tok |