671 projects whose own agent configuration covers scientific. These are not mods to install — they are how the maintainers of these repositories tell an agent what to do, and what to avoid.
All projects Building agents7,374Claude Code6,573Data and AI3,706Backend and APIs3,486Languages3,398Planning3,181Git and workflow3,100Code review2,701Memory and context2,354Testing2,311Research2,292DevOps and cloud2,282
Any agent Claude CodeCodexOpenCodeGitHub CopilotGemini CLICursorWindsurfKiro
| Project | Stars | Configures | Files | Always loaded |
|---|---|---|---|---|
| tsdfs930514/econ-research-workflow Claude Code skills framework for economics research (DID, IV, RDD, Panel, SDID) | 11 | Claude Code | 14 | 3,543 tok |
| marcoemrich/agentic_coding_lab A research lab for agentic coding - use it to verify of falsify, running various agentic s | 11 | Claude Code, OpenCode | 11 | 4,115 tok |
| Joe-rq/academic-paper-workflow | 11 | Claude Code | 4 | 2,029 tok |
| TorchedHat/torchtalk Chat with the complete PyTorch codebase using AI. torchtalk enables developers to have nat | 11 | Claude Code | 3 | 1,205 tok |
| LAThomson/prism A scaffold for automating science-of-evaluations research | 11 | Claude Code | 1 | — |
| hevangel/dvcon_ai_library DVCON AI library | 11 | Claude Code, Codex, OpenCode | 3 | 9,735 tok |
| PancrePal-xiaoyibao/mcp-pubmed-server-pancrpal An MCP tool that enables local agents to efficiently crawl PubMed papers via API; original | 11 | Claude Code | 1 | 884 tok |
| zachgoldfine44/mechinterp-replication | 11 | Claude Code | 1 | 9,216 tok |
| ShangBioLab/SpatialClaw | 11 | Claude Code, Codex, OpenCode | 2 | 2,731 tok |
| SeequentEvo/evo-data-converters Convert data between geoscience formats and Evo geoscience objects to improve interoperabi | 11 | Claude Code, Codex, OpenCode | 6 | 1,656 tok |
| rnabioco/scraps rnabioco.github.io Single Cell RNA PolyA Site Discovery | 11 | Codex, OpenCode | 1 | 2,066 tok |
| MathGloss/MathGloss mathgloss.github.io | 11 | Codex, OpenCode | 1 | 2,222 tok |
| dcroote/lambs Local Analysis of mAb Sequences | 11 | Codex, OpenCode | 1 | 1,793 tok |
| open-pgx/openpgx openpgx.ai The open standard for AI-readable pharmacogenomics. MCP Server for personalized drug-gene | 11 | Cursor | 1 | — |
| Ching-Chiang/comsol-mcp | 11 | Claude Code, Codex, OpenCode | 2 | 2,253 tok |
| ezhou89/medical-research-mcp-suite AI-Enhanced Medical Research API unifying ClinicalTrials.gov, PubMed, and FDA databases wi | 11 | Claude Code | 1 | 2,349 tok |
| maxwellsdm1867/wheeler Turn Claude Code into an interactive scientific workspace: workflow, file system, and know | 11 | Claude Code | 48 | 5,892 tok |
| maxwell2732/codex-r-empirical-research A Codex R pipeline for reproducible empirical research by 朱晨 | Genetic social science rese | 11 | Claude Code, Codex, OpenCode | 38 | 4,355 tok |
| rlacombe/switchback-running switchback.run Ultrarunning training companion agent powered by Intervals.icu. | 10 | Claude Code, Codex, Gemini CLI, OpenCode | 16 | 14,404 tok |
| labrinyang/apple-health-analysis Mayo Clinic-grade Apple Health data analysis — Claude Code skill with 20 peer-reviewed sta | 10 | Claude Code | 1 | — |
| nasqret/lean-interact Interactive Lean 4 + Mathlib formalization from a Claude Code conversation | 10 | Claude Code | 7 | 4,212 tok |
| Mapika/nice-figures Soft-pastel, research-blog-style matplotlib figures as an installable Claude Code plugin. | 10 | Codex, OpenCode | 1 | 837 tok |
| LBurny/symkit-mcp It is an MCP server that lets AI agents perform step-by-step symbolic derivations: calcula | 10 | Claude Code, Codex, GitHub Copilot, OpenCode | 3 | 3,013 tok |
| Sompote/plaxisMCP | 10 | Claude Code | 1 | — |
| TaoELi/FermiLink fermilink.org FermiLink: AI Agent Framework for Multidomain Autonomous Scientific Simulations and Optimi | 10 | Codex, OpenCode | 1 | 315 tok |
| bgreenwell/statlingo bgreenwell.github.io Explain Statistical Output with Large Language Models | 10 | Claude Code, Codex, OpenCode | 2 | 2,235 tok |
| Shiien/research-closure-harness | 10 | Claude Code, Codex, OpenCode | 4 | 1,468 tok |
| Chuan-Peng-Lab/SPE_Database | 10 | Codex, OpenCode | 2 | 4,814 tok |
| s1ddh-rth/HumanoidClimb-RL This project explores the application of reinforcement learning (RL) to train humanoid rob | 10 | Claude Code | 1 | 3,185 tok |
| briangmilnes/APAS-VERUS Proving 'Algorithms Parallel and Sequential' in Rust (APAS-AI) using Verus. | 10 | Claude Code, GitHub Copilot | 2 | 50,605 tok |
| shukwong/gnomad-mcp-server Model Context Protocol server for gnomAD (Genome Aggregation Database) GraphQL API | 10 | Claude Code | 1 | 202 tok |
| TaoELi/MaxwellLink maxwelllink.org A flexible framework for self-consistent EM-molecular simulations, powered by AI agent ski | 10 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 755 tok |
| zfy465914233/scholar-agent Knowledge agent for LLMs — online research + local accumulation, gets smarter over time. M | 9 | GitHub Copilot | 1 | 528 tok |
| SebastianElvis/reaper AI-native scientific research pipeline. Takes a research goal and autonomously runs multi- | 9 | Claude Code | 1 | 1,877 tok |
| cyanheads/pubchem-mcp-server npmjs.com Search the PubChem chemical database for compounds, properties, safety data, bioactivity, | 9 | Claude Code | 1 | 4,977 tok |
| qgeng1465/bio-mcp qgeng1465.github.io 🧬 BioMCP — Bioinformatics MCP server: PubMed/NCBI/BLAST/PDB/UniProt/enrichment analysis, | 9 | Claude Code | 4 | — |
| quattro/jax-numerics-agent SKILLS.md definitions for JAX/Equinox based software development | 9 | Codex, OpenCode | 1 | 262 tok |
| huangzhonglv/hep-workflow A skill-based agent workflow for high-energy physics phenomenology: from model proposal th | 9 | Claude Code, Codex, OpenCode | 8 | 3,316 tok |
| YuliaNuzhnenko/bioinformatics-agent-skills The #1 open-source collection of scientific AI Agent Skills, tool specifications, and prom | 9 | Claude Code, Codex, OpenCode | 2 | 435 tok |
| malkreide/swiss-public-data-mcp MCP servers connecting AI models to Swiss public and open data sources | 9 | Claude Code | 1 | 2,712 tok |
| gatordevin/avo Open reproduction of NVIDIA's AVO paper (arXiv:2603.24517): evolutionary search where an a | 9 | Claude Code, Codex, OpenCode | 2 | 1,178 tok |
| eco-emma/emma_envdata Environmental data processing for www.emma.eco | 9 | Claude Code, GitHub Copilot | 16 | 826 tok |
| Aledon8/OpenLeukemia openleukemia.com OpenLeukemia is a patient-centered platform for organizing leukemia-related medical data, | 9 | Claude Code, Codex, GitHub Copilot, OpenCode | 9 | 2,788 tok |
| pengzhangzhi/superpowers-ml Skills that make your AI agent do ML research like a skeptical scientist, not a hype machi | 8 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 1,913 tok |
| whenpoem/aiscientist An AI-driven research workflow for generating ideas, running experiments, and writing scie | 8 | Claude Code, Codex, OpenCode | 6 | 1,865 tok |
| Utolaris/Stata-CLI Stata CLI for AI agents and coding agents (Codex, Claude Code, Cursor, OpenCode). Run Stat | 8 | Codex, OpenCode | 1 | 559 tok |
| vlln/pdffigures-mcp-server Extract figures and tables from PDF documents using this FastAPI-based service. The Figure | 8 | Claude Code | 1 | 977 tok |
| fkguo/nds-mcp Nuclear Data Services MCP server — offline SQLite-backed nuclear physics data queries | 8 | Claude Code, Codex, OpenCode | 2 | 3,519 tok |
| zhouziyue233/great-econometrics Econometrics plugin for Claude and Cursor | 8 | Claude Code | 1 | 1,160 tok |
| aryaminus/astro astro-api-a2rc.onrender.com Astrology MCP server & Agent Skill — birth charts, transits, synastry across Western, Vedi | 8 | Claude Code, Codex, GitHub Copilot, Cursor, OpenCode | 4 | 1,589 tok |