671 projects whose own agent configuration covers scientific. These are not mods to install — they are how the maintainers of these repositories tell an agent what to do, and what to avoid.
All projects Building agents7,374Claude Code6,573Data and AI3,706Backend and APIs3,486Languages3,398Planning3,181Git and workflow3,100Code review2,701Memory and context2,354Testing2,311Research2,292DevOps and cloud2,282
Any agent Claude CodeCodexOpenCodeGitHub CopilotGemini CLICursorWindsurfKiro
| Project | Stars | Configures | Files | Always loaded |
|---|---|---|---|---|
| altmetric/altmetric-mcp MCP server for Altmetric APIs - retrieve citation metrics and research output data for AI | 7 | Claude Code, Codex, OpenCode | 2 | 3,292 tok |
| fmschulz/omics-skills fmschulz.github.io | 7 | Codex, OpenCode | 1 | 3,034 tok |
| donbr/lifesciences-research AI Agent wrappers for Life Sciences APIs (Open Targets, ChEMBL, UniProt). Accelerating dru | 7 | Claude Code | 23 | 4,822 tok |
| VeryMath/co-mathematician Co-mathematician project for collaborative AI-assisted mathematical research. | 7 | Claude Code, Codex, OpenCode | 9 | 2,327 tok |
| keaven/gsDesignSkills keaven.github.io Claude Code skills for clinical trial design R packages (gsDesign, gsDesign2, rpact, graph | 7 | Claude Code, Codex, OpenCode | 2 | 524 tok |
| ZHANG-923-ZE/origin-MCP Configure MCP to call Origin on opencode for image generation. | 7 | Codex, OpenCode | 1 | 6,584 tok |
| weinaike/galaxy_morphology_mcp Galaxy Morphology Tools MCP Server | 7 | Claude Code, Codex, OpenCode | 4 | 5,402 tok |
| viplee110/economics-paper-reviewer Portable AI pre-review skill for economics papers across Codex, Claude Code, Cursor, and o | 7 | Claude Code, Codex, OpenCode | 2 | 425 tok |
| thematteroftime/agentic-md-for-dummies Paper-driven molecular-dynamics framework with an AI skill that turns physics papers into | 6 | Claude Code | 2 | — |
| malekokour/clinpharm-pmx-skills malekokour.github.io Turn any AI agent into a clinical pharmacologist and pharmacometrician. It reviews, reconc | 6 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 1,501 tok |
| PancrePal-xiaoyibao/VitaForge VitaForge | Life Workshop — an AI4S dry-lab engine focused on general medicine and the bro | 6 | Claude Code, Codex, Gemini CLI, OpenCode | 56 | 3,171 tok |
| pickleton89/cbioportal-mcp A FastMCP server for cBioPortal API with async support for improved performance | 6 | Claude Code | 1 | 2,195 tok |
| daviditkin/ltspice-mcp MCP server for LTspice: run simulations, read waveforms, and analyze circuits from a Claud | 6 | Claude Code | 2 | 2,144 tok |
| Sounio-lang/sounio sounio.vercel.app Self-hosted systems + scientific programming language with epistemic types, uncertainty pr | 6 | Claude Code, Codex, GitHub Copilot, Cursor, OpenCode | 12 | 15,060 tok |
| LoftyTao/ladybug-tools-mcp Ladybug Tools MCP core publish repository | 6 | Codex | 1 | — |
| hooyao/vortex-funnel-gen AI-driven design optimization of a 3D-printable anti-glugging vortex funnel. Automates the | 5 | Claude Code | 2 | 2,116 tok |
| spyrosze/mcp-openfoodtox phoebeai.com MCP server providing tools to access EFSA's comprehensive OpenFoodTox Chemical Hazards in | 5 | Codex, OpenCode | 1 | 6,574 tok |
| lachlanchen/AgInTi-LabCanvas lazying.art AgInTi LabCanvas: agentic studio for editable scientific figures, CAD devices, and experim | 5 | Codex, OpenCode | 1 | 9,085 tok |
| HERRY423/CellTypePilot Agent-native, local-first plugin for auditable single-cell annotation with governed eviden | 5 | Claude Code, Codex, OpenCode | 1 | 4,451 tok |
| sergiorbk/petri-net-sim An editor, a simulator, and a natural-language generator for Petri nets and Petri-object m | 5 | Claude Code, Codex, OpenCode | 6 | 1,625 tok |
| BioSymphony/cryocore Cryo-EM workflows for maps, models, figures, state comparison, and local or cloud compute | 5 | Codex, OpenCode | 1 | 945 tok |
| WolfpackOfOne/Q-agent wolfpackofone.github.io Agentic quantitative research framework for data pipelines, notebooks, and trading strateg | 5 | Claude Code, Codex, OpenCode | 25 | 5,903 tok |
| xxxxchaos/oh-my-sci AI agent team for medical research: an OpenCode workflow plugin for Chinese clinical resea | 5 | Claude Code, OpenCode | 15 | 898 tok |
| Steffen025/pag-extract Kongressprogramme als Datei statt 40 Browser-Tabs — liest das öffentliche Programm jedes m | 5 | Claude Code, Codex, GitHub Copilot, OpenCode | 4 | 1,767 tok |
| lucafusarbassini/research-automation scaling up scientific dreams using claude code on steroids | 5 | Claude Code | 3 | 904 tok |
| paperzilla-ai/paperzilla-skills Paperzilla Agent skills for OpenClaw, Claude Cowork/Code, Codex, ... | 5 | Codex, OpenCode | 1 | 33 tok |
| johnmwangimegwe/kenya-climate-agent Reasoning Over Earth Engine: An AI Agent for Kenya's Climate Risk | 5 | Codex, OpenCode | 1 | 1,057 tok |
| Zayne-sprague/Dr-Claude-Code | 5 | Claude Code | 15 | — |
| dungnotnull/herbal-essential-oil-extraction-agent-skill 🌿 Multi-agent AI framework for aromatic plant processing & phytochemical extraction. Eval | 5 | Claude Code | 1 | 1,538 tok |
| aeren23/image-processing-skills Decision-focused SKILL.md files for AI coding agents working on computer vision projects. | 5 | Codex, OpenCode | 1 | 324 tok |
| steven-jzt/MCM-AI-Assistant An AI assistant system for mathematical modeling competitions based on Claude Code + DeepS | 5 | Claude Code | 6 | 381 tok |
| dungnotnull/arid-region-water-saving-irrigation-agent-skill 🌾💧 Arid-Region Water-Saving Irrigation System Design Engine | Production-grade Claude Co | 5 | Claude Code | 1 | 1,306 tok |
| dungnotnull/black-garlic-fermentation-optimization-agent-skill 🧄 Production-grade multi-agent Claude Skill for black garlic fermentation & functional fo | 5 | Claude Code | 1 | 1,284 tok |
| boettiger-lab/data-workflows Dataset processing workflows for cloud-native geospatial data on NRP Kubernetes | 5 | Claude Code, Codex, GitHub Copilot, OpenCode | 12 | 9,216 tok |
| wafertools/wafermap wafertools.github.io Interactive wafer map visualization and yield analysis for semiconductor test data. Render | 5 | Codex, OpenCode | 1 | 2,904 tok |
| Azure-Samples/AzureML_industry_labs azure-samples.github.io A collection of industry-focused Azure Machine Learning samples | 5 | Codex, OpenCode | 1 | 2,921 tok |
| dungnotnull/shan-snow-tea-production-agent-skill 🍃⛰️ Shan Tuyết Ancient-Tree Tea Processing Optimization Engine | Production-grade Claude | 5 | Claude Code | 1 | 1,274 tok |
| hgaddipati1118/slop-index The Slop Index: a benchmark ranking frontier LLMs by how much AI slop their writing contai | 5 | Claude Code, Codex, OpenCode | 2 | 1,981 tok |
| brainets/braina Brain Interaction Analysis | 5 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 3,362 tok |
| yy6768/tiny-cutlass | 5 | Claude Code, Codex, OpenCode | 3 | 811 tok |
| construo-game/construo construo.github.io A simple 2D physics construction toy | 5 | Codex, OpenCode | 1 | 2,337 tok |
| awegroup/AWETrim Quasi-steady simulations of soft kites. Aerodynamics, aero-structural, optimization, exper | 5 | Codex, OpenCode | 1 | 2,181 tok |
| UI-Research/urbnindicators ui-research.github.io Out of the Box Social Science Indicators from the American Community Survey (ACS) | 5 | Claude Code | 1 | 4,584 tok |
| amenti-labs/hermes-lab File-first autonomous experiment scaffolding for long-running research controlled by AI ag | 5 | Codex, OpenCode | 1 | 510 tok |
| dungnotnull/black-soldier-fly-waste-processing-agent-skill 🪰 Production-grade multi-agent Claude Skill for Black Soldier Fly (Hermetia illucens) org | 5 | Claude Code | 1 | 1,372 tok |
| dungnotnull/rc-boat-hydrodynamics-design-agent-skill 🚤⚓ RC Boat Hydrodynamics & Naval Architecture Engine | Production-grade Claude Code harne | 5 | Claude Code | 1 | 1,456 tok |
| dungnotnull/ancient-costume-mural-reconstruction-agent-skill 🏛️👘 Ancient Costume & Mural Textile Reconstruction Engine | skill & Python architecture | 5 | Claude Code | 1 | 1,535 tok |
| dungnotnull/custom-water-cooling-loop-design-agent-skill 🖥️💧 Custom PC Liquid Cooling Loop Design Engine | Production-grade Claude Code skill & P | 5 | Claude Code | 1 | 1,265 tok |
| dungnotnull/rare-book-manuscript-conservation-agent-skill 📜🏛️ Rare Book & Manuscript Conservation Science Engine | Production-grade Claude Code ha | 5 | Claude Code | 1 | 1,257 tok |
| dungnotnull/ai-coastal-erosion-monitoring-agent-skill 🌊 Multi-agent AI framework for coastal shoreline risk prediction & storm damage modeling. | 5 | Claude Code | 1 | 1,311 tok |