awslabs/hcls-agent-skills is a collection of reusable instructions that help AI agents handle healthcare and life sciences work, including genomics, medical imaging, claims, and drug discovery. It is intended for agents running on Agent Skills-compatible platforms, and the catalogue entries are its individual domain skills.
Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx skills add awslabs/hcls-agent-skills --skill rna-seq-analysisgit clone --depth 1 https://github.com/awslabs/hcls-agent-skillsWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/awslabs/hcls-agent-skills/rna-seq-analysis)<a href="https://agentmods.dev/skills/awslabs/hcls-agent-skills/rna-seq-analysis"><img src="https://agentmods.dev/badge/skills/awslabs/hcls-agent-skills/rna-seq-analysis/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/skills/awslabs/hcls-agent-skills/rna-seq-analysis"><img src="https://agentmods.dev/badge/skills/awslabs/hcls-agent-skills/rna-seq-analysis.svg" alt="Reviewed on agentmods" width="80" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00103 | $0.01332 |
| Opus 5 | $0.00051 | $0.00666 |
| Sonnet 5 | $0.00021 | $0.00266 |
| Haiku 4.5 | $0.00010 | $0.00133 |
Grade A, and why
rna-seq-analysis scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 12d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
The source is not reproduced here
Licensed MIT-0
The repository is licensed MIT-0, which this catalogue does not treat as permission to reproduce the file. Read it at the source.
What ships with it
1 file beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 12d ago First seen · 110 lines · 103 tokens per session scan A 0477a8ca74d5
rna-seq-analysis is a skill published in the GitHub repository awslabs/hcls-agent-skills (33 stars, last pushed 11d ago), licensed MIT-0. It adds 103 tokens to every session and 1,332 once invoked, about $0.0005 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.
Other skills, from other repositories
bulk-transcriptomics
Bulk RNA-seq and microarray differential expression analysis including method selection, batch correction, and complex experimental designs.
sc-de
Load when finding marker genes per cluster or comparing condition expression in single-cell RNA-seq. Skip when the data is bulk (use bulkrna-de); spatial (use spatial-de); cluster-only markers without conditions (use sc-markers).
bulkrna-de
Load when comparing gene expression between two conditions in bulk RNA-seq count data. Skip when the data is single-cell (use sc-de); spatial (use spatial-de); you need exon-level alternative splicing (use bulkrna-splicing).
spatial-condition-comparison
Experimental condition comparison using pseudobulk differential expression with proper multi-sample statistics.
scanpy
Standard single-cell RNA-seq analysis pipeline. Use for QC, normalization, dimensionality reduction (PCA/UMAP/t-SNE), clustering, differential expression, and visualization. Best for exploratory scRNA-seq analysis with established workflows. For deep learning models use scvi-tools; for data format questions use…
bias-detection
Assess systematic biases in the evidence body — publication bias, reporting bias, and selective outcome reporting. Budget: 40 studies, 40 effect sizes, 40 web searches.