20 tagged transcriptomics, measured the same way as everything else here.
Browse within: bioinformatics 19Single-Cell 13multi-omics 10knowledge-graph 9llm-agent 9multi-agents 9multiomics 7precision-medicine 7
Skill Claude CodeCodex
Query CZ CELLxGENE Census (61M+ cells). Filter by cell type/tissue/disease, retrieve expression data, and integrate with scanpy/PyTorch for population-scale single-cell analysis. Use this skill when: (1) Querying single-cell expression data by cell type, tissue, or disease, (2) Exploring available single-cell datasets…
Skill Claude CodeCodex
Use for any task involving the decoupler library — inferring biological activity/enrichment scores from omics data (bulk, single-cell, spatial). Triggers on estimating transcription factor (TF) activity, pathway activity, or gene-set enrichment from an AnnData/DataFrame; running ulm, mlm, ora, gsea, gsva, aucell…
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Discover and invoke 1,676 deduplicated biomedical AI agent skills from the Awesome Bio Agent Skills repository (20 source repos, 15 categories). Use this skill as a router whenever a user needs a bioinformatics/biomedical task (genomics, transcriptomics, single-cell, proteomics, protein design, clinical, epigenomics…
Skill Claude CodeCodex
Core DESeq2 workflow for RNA-seq differential expression analysis with count data.
Skill Claude CodeCodex
Complete workflow for single-cell RNA-seq analysis using Seurat v5. Process raw data through quality control, normalization, clustering, and cell type annotation with publication-ready visualizations.
lynnlangit/precision-medicine-mcp
Skill Claude CodeCodex
Audits all Markdown files in the precision-medicine-mcp repo against six canonical principles: (A) server Python code is the authoritative tool count, (B) server-registry.md is the authoritative server/tool summary, (C) all three patient outcomes (PAT001/PAT002/PAT003) must be represented consistently, (D) no content…
lynnlangit/precision-medicine-mcp
Skill Claude CodeCodex
Ensures all development meets clinical compliance and security standards. Focuses on HIPAA-friendly logging, audit trails, risk assessment, and scientific nomenclature.
lynnlangit/precision-medicine-mcp
Skill Claude CodeCodex
Expert guide for testing bioinformatics MCP servers. Covers pytest, DRYRUN modes, and PatientOne simulation scenarios.