16,357 mods in this category, of every kind an agent can take. Each one carries what it costs per session, what the scan found, and whether it is the original.
Plugin Claude Code
Bundles 1 skill, 6 commands, 1 agent · 578 tokens together
Publication-quality figures, plots, and diagrams for academic papers, with a render-view-fix iteration loop.
Skill Claude CodeCodex
Use when the user wants to "productionize", "port", "package", "harden", "clean up", or "make installable" research, academic, or prototype code — loose scripts, notebooks, or a one-off repo — turn scripts/notebooks into a real library, get something pip/uv-installable, or build an HPC/SLURM-friendly tool that runs…
sunjongos/paper-orchestra-for-claude-code
Skill Claude Code
An end-to-end workflow for writing SCI research papers, which are scientific papers intended for journals indexed by the Science Citation Index. It supports brainstorming, novelty checks, paper structure, reviews, bilingual writing, and final document files.
Skill Claude CodeCodex
Use when and ONLY when the user explicitly requests paper writing and G4 (write-ready) gate has passed — handles LaTeX structure, senior-level writing, reference verification, and iterative refinement.
Plugin Claude Code
Bundles 1 skill, 1 command · 222 tokens together
Search, read, and chat with the DVCon conference paper corpus via the dvcon MCP server, a dvcon-papers skill, and a /dvcon slash command.
Skill Claude CodeCodex
Identify tissue regions and spatial niches from preprocessed spatial transcriptomics data using Leiden, Louvain, SpaGCN, STAGATE, GraphST, or BANKSY.
Skill Claude CodeCodex
Computational protein design toolkit. Use this skill group when: (1) Designing protein binders from scratch, (2) Predicting protein structures (Chai, Boltz, Protenix), (3) Sequence design with ProteinMPNN/LigandMPNN/SolubleMPNN, (4) Quality control and filtering of protein designs, (5) Planning and managing binder…
Skill Claude CodeCodex
Cryo-ET data processing pipeline using WARP, AreTomo2, PyTOM, and OPUS-ET. Use this skill whenever the user is processing cryo-electron tomography (cryo-ET) data, including: importing frame series or tilt series from MDOC files, CTF estimation, AreTomo2 alignment, template matching with PyTOM, exporting subtomograms…
Skill Codex
A workflow for building a long-term Obsidian research workspace around a scientific paper topic. Obsidian is a note-taking app that links and organizes Markdown files.
GoneTone/mcp-server-taiwan-weather
MCP server Claude CodeCodexCursor +2
A local MCP server that lets a coding agent retrieve data from Taiwan’s Central Weather Administration API, a government source for weather information.
Skill Claude CodeCodex
CRUCIBLE: a Claude-only adversarial expert workshop that stress-tests a scientific paper and then, opt-in, rebuilds it. ACT I (TRIBUNAL): from the paper PDF (plus a few public cited works it fetches), a topic-adapted fleet of expert referee subagents (every contested claim argued from at least two COMPETING…
afhverjuekki/claude-code-aristotle-plugin
Plugin Claude Code
Bundles 1 skill, 2 commands, 2 agents · 191 tokens together
Aristotle AI integration for Lean 4 formalization and code verification. Formalizes mathematical proofs and verifies algorithm correctness with 96.8% accuracy on VERINA benchmark.
Skill Claude CodeCodex
Generate a Sphinx-ready report bundle (plots, RST, contract, per-accepted-commit pages) from a completed fermilink optimize workspace. Use when the user asks to visualize, export, or publish optimization results from a .fermilink-optimize directory, or wants to prepare material for the Project Optimization website.
Skill Claude CodeCodex
A framework for evaluating pharmaceutical drug-development projects across biology, drug design, clinical and regulatory plans, and commercial conditions. It also classifies projects by how differentiated their innovation is.
Skill Claude CodeCodex
Use this skill to process one to 99 local exact 2:1 equirectangular panorama images with Realsee Argus, producing depth maps, a merged GLB point cloud, camera poses, optional intrinsics, and a validated local output index. Trigger for Argus panorama reconstruction, Argus ZIP input, explicit Argus lifecycle requests…
poplarity/dsh-science-workbench
Skill Claude CodeCodex needs its repo
A set of rules for running reproducible bioinformatics analyses, which study biological data with software. It uses small self-contained scripts, recorded inputs and outputs, environment details, and version history so results can be repeated.
MCP server Claude CodeCodexCursor +2
HEOR MCP server: literature search, CEA, BIA, NMA/MAIC, HTA dossiers (NICE/FDA/EMA/JCA). Runs locally from the heor-agent-mcp npm package.
Plugin Claude Code
Bundles 34 skills, 4 agents · 1,570 tokens together
Bioinformatics, literature discovery, scientific writing, and data visualization agents and skills for Claude Code and Cowork.
MCP server Claude CodeCodexCursor +2
MCP server for FatSecret API - food search, nutrition, diary, recipes, weight tracking (unofficial). Runs locally from the fatsecret-mcp npm package. Needs 3 environment variables to run.
Skill Claude CodeCodex needs its repo
You are an agent that builds, analyses, and queries SkyCiv Structural 3D (S3D) structural models via the SkyCiv API. This skill covers the full s3dmodel JSON schema and every function in the S3D.model, S3D.results, S3D.file, and S3D.SB namespaces, plus the S3D.design member/RC design checks.
Skill Codex
Use when creating, revising, or auditing source-grounded mathematical Beamer slide decks from papers, notes, proofs, lectures, experiments, or existing LaTeX slides across pure mathematics, applied mathematics, computational mathematics, statistics, optimization, geometry, topology, algebra, number theory…
Skill Codex needs its repo
Use when Codex needs to solve, reproduce, test, compare, generate examples for, or diagnose CDOpt manifold optimization workflows, including CDOpt package smoke tests, official problem description cards, Stiefel dictionary learning, SciPy wrappers, PyTorch/JAX/NumPy CDOpt examples, dependency checks, tiny CPU…
Skill Claude CodeCodex
Standardize the inline comment/fix cycle for LaTeX papers: the owner edits .tex files and leaves % comments; you capture every comment verbatim into a persistent ISSUES.md ledger, fix each one in the sources, describe each fix in plain language, promote recurring lessons into standing rules, and land the round with a…
Skill Claude CodeCodex
Search foods, estimate and log meals and water, and track nutrition goals with the local nourish MCP server (USDA FoodData Central, Open Food Facts barcodes, local JSON/JSONL diary). Use when the user asks about calories, macros, what they ate, logging a meal or barcode, hydration, nutrition goals, or a daily or…
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