Scientific

svallory/the-notebook-mcp

Cursor rule Cursor

Use these rules when working with jupyter notebooks or .ipynb files.

codewithcheese/jupyter-kernel-mcp

MCP server Claude CodeCodexCursor +2

MCP server for stateful Jupyter kernel development with multi-language support (Python, TypeScript, JavaScript). Runs locally from the jupyter-kernel-mcp Python package.

PaulMRamirez/yamcs-mcp-server

MCP server Claude CodeCodexCursor +2

MCP server "yamcs-mcp-server" as configured in PaulMRamirez/yamcs-mcp-server. Runs locally from the yamcs-mcp-server Python package.

tejasvinu/mcp-slurm

MCP server Claude CodeCodexCursor +2

SLURM MCP server for HPC cluster management. Runs locally from the mcp-slurm npm package.

hanxuanliang/pubmed-mcp-server

MCP server Claude CodeCodexCursor +2

MCP server "pubmed-mcp-server" as configured in hanxuanliang/pubmed-mcp-server. Runs locally from the pubmed-mcp-server Python package.

alexrobl/geoanalisis-mcp

MCP server Claude CodeCodexCursor +2

MCP server "geoanalisis-mcp" as configured in alexrobl/geoanalisis-mcp. Runs locally from the geoanalisis-mcp Python package.

Suzhou-Tongyuan/sysbuilder-mcp-server

Skill Codex

Use when creating, refining, reviewing, or validating SysML models in this workspace, especially when the task involves Sysbuilder, requirements, behavior, structure, interfaces, parameters, traceability, naming, diagram selection, or model quality checks.

ythalorossy/openfda

MCP server Claude CodeCodexCursor +2

MCP server "openfda" as configured in ythalorossy/openfda. Launched with openfda. Needs 1 environment variable to run.

MohamedElashri/cerngitlab-mcp

Skill Claude CodeCodex

Search, browse, and analyze CERN GitLab repositories for HEP code, documentation, and examples. Use this skill whenever the user mentions CERN GitLab, LHCb/ATLAS/CMS code, HEP software stacks, or wants to find code patterns, inspect build systems, read READMEs, search issues, or explore releases in gitlab.cern.ch…

aws-samples/sample-laboratory-data-transformation-mcp

MCP server Claude CodeCodexCursor +2 ✓ vendor

MCP server "allotrope-mcp-server" as configured in aws-samples/sample-laboratory-data-transformation-mcp. Runs locally from the allotrope-mcp-server Python package.

PancrePal-xiaoyibao/dicom_download_mcp

MCP server Claude CodeCodexCursor +2

MCP server for DICOM image downloading from multiple medical imaging sources. Runs locally from the dicom-mcp npm package.

scmcphub/decoupler-mcp

MCP server Claude CodeCodexCursor +2

Natural language interface for biological activities analysis with decoupler through MCP. Runs locally from the decoupler-mcp Python package.

hamzameer/ncbi-mcp-server

MCP server Claude CodeCodexCursor +2

MCP server "NCBI Research Assistant" as configured in hamzameer/ncbi-mcp-server. Launched with /Users/S228627/.local/bin/uv run --with mcp[cli] mcp run /Users/S228627/Library/. Needs 1 environment variable to run.

cyanheads/openfda-mcp-server

Plugin Claude Code

Bundles 32 skills, 1 MCP server · 2,220 tokens together

Query FDA data on drugs, food, devices, and recalls via openFDA. STDIO or Streamable HTTP.

PHOENIXxXTM/Claude-MCP-Server

MCP server Claude CodeCodexCursor +2

PyWeather branch; bindings for Davis Vantage Pro and Pro2 weather stations, upload of weather data (e.g. wunderground.com), and meteorological calculation/conversion functions. Runs locally from the weather Python package.

GifariKemal/argus-web-mcp

MCP server Claude CodeCodexCursor +2

Helper routines for using multiple, inexpensive calibrated and synchronized cameras for 3D scientific use. Runs locally from the argus Python package.

StructuralWizard/beam-analysis-mcp

MCP server Claude CodeCodexCursor +2

MCP server "beam-analysis-mcp" as configured in StructuralWizard/beam-analysis-mcp. Runs locally from the beam-analysis-mcp npm package.

MoleCare/molecare-mcp

MCP server Claude CodeCodexCursor +2

Educational dermatology knowledge and mole tracking. No credentials needed. Not a medical device. Runs locally from the molecare-mcp npm package. Needs 5 environment variables to run.

PantelisGeorgiadis/dicomweb-mcp-server

MCP server Claude CodeCodexCursor +2

MCP server exposing a DICOMweb DICOM archive to AI assistants via QIDO-RS and WADO-RS. Runs locally from the dicomweb-mcp-server npm package. Needs 6 environment variables to run.

cyanheads/brapi-mcp-server

Plugin Claude Code

Bundles 32 skills, 1 MCP server · 2,220 tokens together

A collaborative BrAPI v2.1 workspace for multi-agent research via MCP. Search studies, germplasm, genotypes, & more - across Breedbase, T3, Sweetpotatobase, & any BrAPI v2-compliant server.

huguryildiz/ieee-acm-paper-writing

Plugin Claude Code

Bundles 1 skill · 151 tokens together

Evidence-bounded drafting, rewriting, auditing, and venue adaptation for IEEE and ACM engineering manuscripts.

SFETNI/Scientific-Writing-Skills-Claude-Code-Codex

Command Claude Code

Draft or improve the Discussion section using: argument flow review → claim calibration → reviewer perspective.

Hongda-Zhao/bio-gene-to-reference-tree

Skill Claude CodeCodex

Orchestrate this repository's end-to-end auditable protein or nucleotide gene-tree workflow. Use when a request spans several stages or the active stage is unclear; select one task adapter, then follow the canonical Skill and its review gates.

ai4paper/apaper-plugin

Skill Claude CodeCodex

Creates publication-quality scientific figures for academic papers. Backend is chosen by host paper extension — .tex papers get TikZ figures, .typ papers get CeTZ figures; the two are never mixed. Use when creating block diagrams, system architectures, flowcharts, or technical illustrations for papers and theses.…