532 projects whose own agent configuration covers scientific. These are not mods to install — they are how the maintainers of these repositories tell an agent what to do, and what to avoid.
All projects Building agents7,450Claude Code6,586Data and AI3,698Backend and APIs3,488Languages3,402Planning3,191Git and workflow3,129Code review2,728Memory and context2,353Testing2,330DevOps and cloud2,293Research2,288
Any agent Claude CodeCodexOpenCodeGitHub CopilotGemini CLICursorWindsurfKiro
| Project | Stars | Configures | Files | Always loaded |
|---|---|---|---|---|
| meleantonio/AC4E_Pavia Participant materials for Agentic Coding for Economists, University of Pavia 2026 | 2 | Claude Code, Codex, OpenCode | 12 | 259 tok |
| Felipe-SO/coarse-ink-claude-code Coarse.ink to run directly in Claude Code as skills. | 2 | Claude Code | 9 | 2,709 tok |
| Mahir-Isikli/claude-code-for-research Claude Code skills & routines for academic research — HU Berlin session, June 2026 | 2 | Claude Code, Codex, OpenCode | 2 | 236 tok |
| sangwonme/ClaudeCode-SeeFig-Skill | 2 | Claude Code | 1 | — |
| jbrogueira/bank_of_portugal_ai_2026 Course materials for AI Tools for Economics Research, Banco de Portugal 2026 | 2 | Claude Code | 4 | 858 tok |
| TencentEdgeOne/claude-agent-starter-python | 2 | Claude Code | 1 | — |
| FilippoScaramuzza/agentic-reviewer An agentic framework for academic paper peer review — a team of AI agents explores a targe | 2 | Claude Code, Codex, Cursor, OpenCode | 15 | 1,493 tok |
| Eklavya-San/CTQ-extraction eklavya-san.github.io AI agent skill for extracting Critical-To-Quality (CTQ) parameters, GD&T feature control f | 2 | Claude Code, Cursor, Gemini CLI | 3 | 231 tok |
| RintaroMasaoka/daily-arxiv | 2 | Claude Code, Codex, OpenCode | 3 | 3,813 tok |
| ianandersonlol/HiveTransition | 2 | Claude Code, Codex, OpenCode | 2 | 2,663 tok |
| zzz20020612/scientific-figure-standards Global scientific figure and map standards skill for Codex. | 2 | Claude Code, Codex, OpenCode | 2 | 1,093 tok |
| tsdfs930514/econ-research-workflow-cn Economics research workflow — a Claude Code-driven reproducible economics research templat | 2 | Claude Code | 17 | 4,056 tok |
| Guo-Chenxu/paper-agent What era are we living in, still doing traditional research? | 2 | Claude Code, Codex | 11 | 899 tok |
| champagnepapihz/math-modeling-starter A mathematical modeling competition starter template with a standardized directory structu | 2 | Claude Code | 1 | 5,366 tok |
| burakcanpolat/med-guide AI-powered medical image analysis & clinical assistant. Understands X-rays, CT, MRI, DICOM | 2 | Claude Code, Codex, OpenCode | 5 | 4,676 tok |
| stanveer/Biomedical-Agent-DB-Karpathy A production-oriented foundation for building a biomedical knowledge base for LLM-assisted | 2 | Claude Code, Codex | 2 | 553 tok |
| AIHongDOU/DoctorWhy | 2 | Claude Code, Codex, OpenCode | 2 | 613 tok |
| fbabelle/PrettySeriousResearcher | 2 | Claude Code, Codex | 17 | — |
| smallinaUCSD/growth-percentile-skill | 2 | Claude Code, Codex, OpenCode | 2 | 998 tok |
| bjhardcastle/nwb-mcp-server An MCP server for accessing NWB (Neurodata Without Borders) files, providing AI agents eas | 2 | Claude Code | 1 | — |
| FlowRegSuite/flowreg-agent-skills | 2 | Claude Code, Codex, OpenCode | 1 | 1,172 tok |
| masa061580/enhanced-pubmed-mcp-server | 2 | Claude Code | 1 | 629 tok |
| biocontext-ai/protocol-mcp Wet lab protocol retrieval MCP server, including protocols.io | 2 | Claude Code, Codex, OpenCode | 2 | 68 tok |
| NSF-Simons-CosmicAI-Institute/manna MCP server for NRAO (mostly ALMA) and NOIRLab data access | 2 | Claude Code | 1 | 3,236 tok |
| QINGMINGMIKU/protein-lab Local protein experiment management system — Flask + SQLite, with protein concentration ca | 2 | Claude Code | 3 | 8,578 tok |
| cyanheads/paleobiology-mcp-server npmjs.com Search fossil occurrences, resolve taxon fossil ranges, plot diversity through deep time, | 2 | Claude Code, Codex, OpenCode | 2 | 13,846 tok |
| keta1930/icml2026-mcp keta1930.github.io MCP server for session-aware hybrid search over 6,341 ICML 2026 papers | 1 | Claude Code, Codex, OpenCode | 2 | 977 tok |
| asokore/statcite statcite.com Official economic statistics for AI agents — every number with a full citation, plus verif | 1 | Claude Code, Gemini CLI | 2 | 2,618 tok |
| cyanheads/faostat-mcp-server npmjs.com Global food & agriculture statistics from the UN FAOSTAT bulk-download corpus, served from | 1 | Claude Code, Codex, OpenCode | 2 | 14,318 tok |
| cyanheads/calculator-mcp-server npmjs.com Evaluate, simplify, and differentiate mathematical expressions via MCP. STDIO or Streamabl | 1 | Claude Code, Codex, OpenCode | 2 | 12,660 tok |
| cyanheads/gnomad-genetics-mcp-server npmjs.com Ancestry allele frequencies, LoF constraint, variant lists, and coverage from gnomAD, join | 1 | Claude Code, Codex, OpenCode | 2 | 12,548 tok |
| cyanheads/bls-labor-mcp-server npmjs.com Fetch US Bureau of Labor Statistics data — CPI, unemployment, wages, JOLTS, and more via M | 1 | Claude Code, Codex, OpenCode | 2 | 11,150 tok |
| cyanheads/chembl-mcp-server npmjs.com Link compounds to protein targets, rank bioactivity (IC50/Ki/EC50), and look up drug mecha | 1 | Claude Code, Codex, OpenCode | 2 | 14,242 tok |
| dfieser/hea-bench dfieser.github.io Free high-entropy alloy (HEA) and high-entropy oxide calculator: mixing entropy, atomic-si | 1 | Claude Code, Codex, OpenCode | 2 | 7,698 tok |
| forever-healthy/evipedia-mcp MCP Server for evipedia.ai | 1 | Claude Code | 2 | — |
| gregario/3dprint-oracle 3D printing filament and materials knowledge MCP server | 1 | Claude Code | 1 | 280 tok |
| Mjvolk3/torchcell Datasets, transformations, and pretrained models for biological cellular systems. | 1 | Claude Code | 39 | 12,957 tok |
| pickleton89/mutation-clinical-trial-matching-mcp MCP server to query clinicaltrial.gov to identify mutation specific trials | 1 | Claude Code | 1 | 2,331 tok |
| MacromNex/alphafold3_mcp AlphaFold3 MCP server for protein structure prediction, supporting batch prediction | 1 | Claude Code | 1 | 1,023 tok |
| MGS-sails/mgnify-mcp - MGnify MCP Server implements the Model Context Protocol to expose MGnify’s metagenomic | 1 | Claude Code | 1 | — |
| GadatheGod/freecad-mcp-pro Professional-grade FreeCAD MCP server enabling AI assistants to create parametric 3D model | 1 | Claude Code, OpenCode | 7 | — |
| riccardovietri/thermal-mcp-server | 1 | Claude Code, Codex, OpenCode | 2 | 2,257 tok |
| marfago/arxiv-sync-mcp-server A Model Context Protocol server for searching and analyzing arXiv papers | 1 | Claude Code | 1 | 571 tok |
| moxus/intervals-icu-mcp-ts MCP Server for intervals.icu | 1 | Claude Code, Codex, OpenCode | 2 | 1,239 tok |
| SVerITG/Metis_PH A Research Cortex. A research companion for Claude. Your library, notes & memory stay on y | 1 | Claude Code, Codex, OpenCode | 43 | 9,723 tok |
| SachinGawande2003/Heuris-BioMCP BioMCP - Comprehensive MCP server for bioinformatics and life sciences | 1 | Claude Code | 1 | 988 tok |
| saitoomituru/PSYCHO-Py800MCP MCP bridge for oscilloscope, logic analyzer, and microscope automation. AI-driven waveform | 1 | Claude Code, Codex, OpenCode | 2 | 2,774 tok |
| biocontext-ai/nucleotide_archive_mcp European Nucleotide Archive dataset search MCP server for agentic RNA-sequencing data disc | 1 | Claude Code, Codex, OpenCode | 2 | 492 tok |
| scitex-ai/claude-code-telegrammer Custom Telegram MCP server + TUI auto-responder for Claude Code — 10 MCP tools, SQLite mes | 1 | Claude Code | 70 | — |
| feordin/nih-umls-mcp An MCP server that serves as a wrapper for the NIH UMLS Api | 1 | Claude Code | 1 | 629 tok |