Run Flux Balance Analysis (FBA) and related constraint-based simulations using COBRApy. Covers standard FBA, parsimonious FBA (pFBA), Flux Variability Analysis (FVA), loopless FBA, gene/reaction knockouts, and carbon source swapping. Outputs flux distributions and CSV files.
Read-only slop review of prose, documentation, reports, agent output, commit messages or PR descriptions. Use when someone asks what is wrong with a draft, asks for an editorial or quality review, asks whether text is padded, vague, puffed up, unsourced or hollow, or asks whether writing "sounds like AI". Produces a…
Repair pass that consumes an existing slop-review findings report and fixes only what it lists. Use when someone asks to clean up, de-slop, tighten, fix or rewrite a draft, documentation page, report or agent output after a review has been produced, or asks to strip vendor residue and placeholder text. Cuts padding…
Verification pass for citations, links, package names and vendor residue. Use when someone asks whether the sources in a document are real, asks to check DOIs, ISBNs, arXiv IDs or URLs, asks whether a cited source actually supports the claim attached to it, asks to check that imported packages exist, or asks to strip…
Drafts or rewrites a Related Work / prior work section positioned against actually-retrieved papers — derives the REQUIRED clusters from the paper's own claimed scope (not just whatever was retrieved), clusters prior work into themes, articulates the delta (what this paper adds) per cluster, enforces a per-cluster…
Searches scholarly literature with zero API keys across DBLP, Crossref, Semantic Scholar, and arXiv. Use when the user wants to find papers, search the literature, list a conference's proceedings (e.g. "all SIGSPATIAL 2025 papers"), survey related work on a topic, look up papers by author/venue/year, get DOIs or…
Clean research code for public release while preserving reported results. Uses releaseaudit.py to separate safe mechanical cleanup from ask-first behavior risks and identity leaks. Use for release-ready repos, dead experiment branches, config extraction, documented entrypoints, and double-blind code cleanup.
A research-literature search and review tool. It helps find published studies, including open-access papers that can be read for free, around a defined research question or topic.
Use when citations, quotations, page numbers, bibliography entries, or source-supported claims must be checked for existence, metadata accuracy, textual fidelity, and claim–source fit.
Use when a manuscript contains recurring concepts, translations, abbreviations, proper names, or near-synonyms whose meanings and forms must remain stable across the argument.
Use when an agent must diagnose research state, select and sequence Humanities Superpowers skills, handle failed gates, and preserve a resumable humanities research workflow.
This skill guides materials engineering researchers through four structured stages — from a raw idea to a fully planned experiment — with human-in-the-loop confirmation at each critical checkpoint.
High Stakes mode: a rigor engine for high-stakes, ambiguous DECISIONS (deck/slide for an investor, board, or client; narrative; positioning; strategic decision). Refines the ask with a pre-filled brief, grounds the inputs in truth, runs a blind adversarial panel (personas × models from different families) over…
Systematic per-citation verification protocol for academic writing. MUST be used whenever writing content that cites sources — papers, blog posts, SOTAs, or any document making factual claims about external work. Triggers (FR + EN) on any writing task involving references, citations, or bibliographic claims, or when…
Final authority on the truthfulness of references cited in State-of-the-Art reviews and academic papers. Activate this skill whenever the session involves auditing, correcting, or cleaning citations in a SOTA or article, or when responding to verdicts from pdf-cascade / registry-doctor. Triggers (FR + EN) : "audit…
Write structured State-of-the-Art (SOTA) reviews / literature reviews for academic research projects with zero hallucinated citations. Activate this skill whenever the user wants to write, update, or expand a SOTA. Triggers (FR + EN) : "écris un SOTA", "état de l'art sur", "revue de littérature", "mise à jour SOTA"…
A research-quality checking system for AI agents. It verifies facts, compares literature, checks experiment designs, and reviews claims about new findings.
Maintain and release the CiteGuard repository. Use only when working inside a CiteGuard source checkout on support-evaluation datasets, human-review packets, calibration, release gates, package smoke tests, MCP registry metadata, or CiteGuard contributor workflows. Do not use for ordinary citation verification.