29 tagged protein design, measured the same way as everything else here.
Browse within: protein-engineering 24design-tools 13binder 7sequence-design 7Structure Prediction 6validation 6
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Discover and invoke 1,676 deduplicated biomedical AI agent skills from the Awesome Bio Agent Skills repository (20 source repos, 15 categories). Use this skill as a router whenever a user needs a bioinformatics/biomedical task (genomics, transcriptomics, single-cell, proteomics, protein design, clinical, epigenomics…
adaptyvbio/protein-design-skills
Skill Claude CodeCodex
All-atom protein design using BoltzGen diffusion model. Use this skill when: (1) Need side-chain aware design from the start, (2) Designing around small molecules or ligands, (3) Want all-atom diffusion (not just backbone), (4) Require precise binding geometries, (5) Using YAML-based configuration. For backbone-only…
adaptyvbio/protein-design-skills
Skill Claude CodeCodex
Guidance for cell-free protein synthesis (CFPS) optimization. Use when: (1) Planning CFPS experiments, (2) Troubleshooting low yield or aggregation, (3) Optimizing DNA template design for CFPS, (4) Expressing difficult proteins (disulfide-rich, toxic, membrane).
adaptyvbio/protein-design-skills
Skill Claude CodeCodex
Quality control metrics and filtering thresholds for protein design. Use this skill when: (1) Evaluating design quality for binding, expression, or structure, (2) Setting filtering thresholds for pLDDT, ipTM, PAE, (3) Checking sequence liabilities (cysteines, deamidation, polybasic clusters), (4) Creating multi-stage…
Skill Claude CodeCodex
Computational protein design toolkit. Use this skill group when: (1) Designing protein binders from scratch, (2) Predicting protein structures (Chai, Boltz, Protenix), (3) Sequence design with ProteinMPNN/LigandMPNN/SolubleMPNN, (4) Quality control and filtering of protein designs, (5) Planning and managing binder…
SPYfighting/my-academic-skills
Skill Claude CodeCodex
Gated protein design campaign: each expert judgement is a checkpoint a human signs off before compute is spent. Branches: de novo binder design (epitope choice, generation, co-folding ensemble ranking, ranked order sheet); structure and complex prediction with calibrated confidence; protein engineering (stability…
BioTender-max/one-person-pharma
Skill Claude CodeCodex
Build a complete AI-powered protein design pipeline with cloud GPU compute (Modal) and automated wet-lab validation (Adaptyv Bio). Enables dry-wet closed-loop iteration for antibody/binder discovery at a fraction of traditional CRO costs ($1.7K for 3 rounds). Use this skill when: (1) Designing a protein/antibody…