23 tagged rdf, measured the same way as everything else here.
Browse within: sparql 18bioinformatics 8knowledge-graph 8model-context-protocol 8uniprot 8biomedical-ai 6
Skill Claude CodeCodex
Part of portaljs
Make a PortalJS portal harvestable by national/EU/US open-data portals — emit standards-compliant DCAT catalog feeds (DCAT 2/3, DCAT-AP, DCAT-US, national profiles) in JSON-LD, Turtle, and RDF/XML at build, with autodiscovery and per-profile conformance checking. Use when a portal needs to be harvested by…
Skill Claude CodeCodex
Part of open-ontologies
AI-native ontology engineering using 50+ MCP tools backed by an in-memory Oxigraph triple store. Build, validate, query, and govern RDF/OWL ontologies with a generate-validate-iterate loop. Use when building ontologies, knowledge graphs, RDF data, SPARQL queries, BORO/4D modeling, SHACL validation, clinical…
jesstalisman-ia/intentional-arrangement-skos
Skill Claude CodeCodex
Build, validate, and convert SKOS thesauri and taxonomies. Use when creating or editing a controlled vocabulary (concepts, preferred/alternate labels, broader/narrower/related, mappings, concept-scheme metadata), when checking a vocabulary for integrity problems (cycles, orphans, duplicate labels, related/broader…
Skill Claude CodeCodex
Debug DanNet frontend behaviour in the live browser via the shadow-cljs nREPL. Use for any frontend-only bug — hydration errors invisible to SSR, CLJS/CLJ behavioural differences (keyword hashing, subs on non-strings), inspecting transit payloads as the client sees them, client-state questions, and CSS/layout/pixel…
Skill Claude CodeCodex
Simon's Clojure/ClojureScript code style. Use whenever writing, editing, refactoring, or reviewing Clojure code — any change to .clj, .cljs, .cljc, or .edn files, code proposed in chat, or REPL experiments that will end up in a file. Consult it before cleanups and "tidying" passes too; those have their own rules here.
Skill Claude CodeCodex
Keep DanNet's PROJECTSUMMARY.md accurate. Use after completing any change that adds/removes namespaces or dependencies, alters architecture or data flow, adds endpoints, UI components, MCP tools, or bootstrap datasets, or changes the development workflow — and whenever asked to "update the project summary". Small…
Skill Claude CodeCodex
Generate or update MIE (Metadata Interoperability Exchange) YAML files that describe RDF databases for TogoMCP. Use this skill whenever the user asks to create, write, regenerate, update, or improve an MIE file for any RDF database (UniProt, ChEMBL, Reactome, Rhea, PubChem, MeSH, PDB, or any new bio/chem database…
Skill Claude CodeCodex
PRISM finds entities (genes, proteins, compounds) at the INTERSECTION of two or more property sets on RDF knowledge graphs via TogoMCP — e.g. "genes common to disease X and druggable pathway Y", "targets both linked to phenotype P and modulated by existing drugs". Use whenever the user asks a set-intersection /…
Skill Claude CodeCodex
Generate, refresh, or replace benchmark questions for the TogoMCP evaluation set (benchmark/questions/questionXXX.yaml). Use whenever the user asks to create, add, extend, refresh, re-validate, replace, redirect, or retire benchmark questions — e.g. "add a few benchmark questions", "extend the QA set", "we need more…
Skill Claude CodeCodex
Exposes SPARQL query capabilities to LLMs via the Model Context Protocol. Supports SELECT, ASK, CONSTRUCT, and DESCRIBE queries against any SPARQL endpoint.
Skill Claude CodeCodex
Use when handling Dependabot PRs, CodeQL/Trivy alerts, or doing a routine dependency/CVE sweep for this repo.
Skill Claude CodeCodex
Use when adding, renaming, or modifying this backend's FastAPI routes, dependencies, middleware, or response behavior.
Skill Claude CodeCodex
Use when preparing to tag, publish, or promote a uniprot-link build.
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: