17 tagged sparql, measured the same way as everything else here.
Browse within: rdf 17bioinformatics 8uniprot 8knowledge-graph 7biomedical-ai 6
Skill Claude CodeCodex
AI-native ontology engineering using 50+ MCP tools backed by an in-memory Oxigraph triple store. Build, validate, query, and govern RDF/OWL ontologies with a generate-validate-iterate loop. Use when building ontologies, knowledge graphs, RDF data, SPARQL queries, BORO/4D modeling, SHACL validation, clinical…
Skill Claude CodeCodex
Generate or update MIE (Metadata Interoperability Exchange) YAML files that describe RDF databases for TogoMCP. Use this skill whenever the user asks to create, write, regenerate, update, or improve an MIE file for any RDF database (UniProt, ChEMBL, Reactome, Rhea, PubChem, MeSH, PDB, or any new bio/chem database…
Skill Claude CodeCodex
PRISM finds entities (genes, proteins, compounds) at the INTERSECTION of two or more property sets on RDF knowledge graphs via TogoMCP — e.g. "genes common to disease X and druggable pathway Y", "targets both linked to phenotype P and modulated by existing drugs". Use whenever the user asks a set-intersection /…
Skill Claude CodeCodex
Generate, refresh, or replace benchmark questions for the TogoMCP evaluation set (benchmark/questions/questionXXX.yaml). Use whenever the user asks to create, add, extend, refresh, re-validate, replace, redirect, or retire benchmark questions — e.g. "add a few benchmark questions", "extend the QA set", "we need more…
Skill Claude CodeCodex
Exposes SPARQL query capabilities to LLMs via the Model Context Protocol. Supports SELECT, ASK, CONSTRUCT, and DESCRIBE queries against any SPARQL endpoint.
Skill Claude CodeCodex
Use when handling Dependabot PRs, CodeQL/Trivy alerts, or doing a routine dependency/CVE sweep for this repo.
Skill Claude CodeCodex
Use when adding, renaming, or modifying this backend's FastAPI routes, dependencies, middleware, or response behavior.
Skill Claude CodeCodex
Use when preparing to tag, publish, or promote a uniprot-link build.