12,531 tagged Scientific, measured the same way as everything else here.
Browse within: bioinformatics 258ai-scientist 209LLM 185agents 185biology 166reasoning-language-models 165ai-scientists 164reasoning-agent 164tool-use 164agent 158data-analysis 129cancer-genomics 128computational-biology 128literature-review 120
Skill Claude CodeCodex
Computational protein design toolkit. Use this skill group when: (1) Designing protein binders from scratch, (2) Predicting protein structures (Chai, Boltz, Protenix), (3) Sequence design with ProteinMPNN/LigandMPNN/SolubleMPNN, (4) Quality control and filtering of protein designs, (5) Planning and managing binder…
Skill Claude CodeCodex
This skill orchestrates a complete structure-based virtual screening (SBVS) pipeline.
Skill Codex
A workflow for systematic reviews, evidence maps, and meta-analyses in medicine, public health, and natural or environmental sciences.
Skill Claude CodeCodex
Cryo-ET data processing pipeline using WARP, AreTomo2, PyTOM, and OPUS-ET. Use this skill whenever the user is processing cryo-electron tomography (cryo-ET) data, including: importing frame series or tilt series from MDOC files, CTF estimation, AreTomo2 alignment, template matching with PyTOM, exporting subtomograms…
Skill Claude CodeCodex
A workflow for building a long-term Obsidian research workspace around a scientific paper topic. Obsidian is a note-taking app that links and organizes Markdown files.
Skill Claude CodeCodex
Create a new academic paper repository with the correct directory structure, venue template, and agent instruction files. Use when the user asks to create a new paper, bootstrap a paper project, start a new submission, or set up a paper repo for a specific venue (NSDI, SIGCOMM, APNet, arxiv).
Skill Codex
Evidence-grounded AI research workflow for turning supplied economics, finance, management, and social-science papers or structured records into versioned PaperReading artifacts. Use when Codex must ingest text, Markdown, or a text-based PDF; separate source-grounded claims from researcher analysis; bind findings to…
Skill Claude CodeCodex
Core Python library for astronomy and astrophysics workflows that need Astropy APIs, including units/quantities, coordinates, FITS I/O, tables, time systems, WCS, and cosmology. Use when implementing or debugging astronomical data analysis code with Astropy.
Skill Claude CodeCodex
A routing guide for mathematical analysis in AI research and cryptography. It helps an agent choose the relevant mathematical ideas and checks for a problem.
Skill Claude CodeCodex
A Chinese-language guide for writing and revising artificial-intelligence research papers for academic conferences.
Skill Claude CodeCodex
Use this skill when both of these are present: (1) a night or time reference — "tonight", "tomorrow", "this weekend", "Saturday night", or any specific date; (2) observing intent — stargazing, skywatching, telescope or binocular use, wanting to know what's visible or "up", asking whether a specific object (planet…
Skill Claude CodeCodex
A Chinese-language stock-analysis skill based on Chan theory, a method for interpreting price-chart structures such as turning points and trading ranges.
Skill Claude CodeCodex
A Chinese-language skill for checking the completeness and consistency of academic manuscripts. It traces claims to original papers, code, and experiment records, then checks related text, tables, scripts, figures, and stored memories.
Galaxy-Dawn/publication-chart-skill
Skill Claude CodeCodex
This skill should be used when the user asks for a publication-quality scientific figure or table, wants help choosing the right chart for results, needs a paper-ready pubfig>=0.3.0 CLI or pubtab workflow, wants a figure + companion table for a results section, wants an Excel sheet turned into publication-ready LaTeX…
Skill Claude CodeCodex
CRUCIBLE: a Claude-only adversarial expert workshop that stress-tests a scientific paper and then, opt-in, rebuilds it. ACT I (TRIBUNAL): from the paper PDF (plus a few public cited works it fetches), a topic-adapted fleet of expert referee subagents (every contested claim argued from at least two COMPETING…
Skill Claude CodeCodex needs its repo
Expert in AMPL solver callbacks via ampls (AMPL Solver Libraries): amplpygurobi, amplpycplex, amplpyxpress, amplpycopt. Use for GenericCallback, lazy constraints, user cuts, subtour elimination, Benders cuts added to the solver matrix, heuristic solution injection, custom stopping criteria, and solve monitoring. Knows…
Skill Claude CodeCodex
Creates publication-quality scientific figures for academic papers using TikZ. Use when creating block diagrams, system architectures, flowcharts, or technical illustrations for papers and theses. Always render a temporary PNG/JPG preview and self-verify visual quality before finalizing figure files.
Skill Claude CodeCodex
Create editable charts, diagrams, figures, posters, or slides from intent, data, or references.
Shoko-official/Claude-Science-System-Prompts
Skill Claude CodeCodex
Conduct rigorous, reproducible multi-step scientific work with literature, databases, local files, Python, R, shell, artifacts, reviewers, and approved compute. Use for evidence synthesis, data or statistical analysis, machine learning, simulation, study design, scientific figures or manuscripts, reproduction audits…
Skill Claude CodeCodex
Drive PLAXIS 2D V20 via the MCP server in this repo — connect, build geometry/materials/boreholes, set BCs, mesh, configure phases (K0/Plastic/Safety), calculate, and read results. Use when the user asks anything about PLAXIS, embankments, soft clay, factor of safety, settlement, soil materials, boreholes, staged…
Skill Claude CodeCodex
Generate a Sphinx-ready report bundle (plots, RST, contract, per-accepted-commit pages) from a completed fermilink optimize workspace. Use when the user asks to visualize, export, or publish optimization results from a .fermilink-optimize directory, or wants to prepare material for the Project Optimization website.
NanxiiChen/wind-simulation-GPU
Skill Claude CodeCodex
Stochastic wind field simulation library (JAX / PyTorch / NumPy) with stationary and nonstationary support. Use this skill whenever working in this repository — it covers both usage (running simulations, benchmarks, validation) and development (architecture, adding backends, modifying the algorithm, config system).…
zjgxuzhou-prog/Claude-Research-Menntor
Skill Claude CodeCodex
A Chinese-language research mentor for PhD students working in deep learning and artificial intelligence. It covers research from choosing a topic and designing experiments through writing papers and responding to reviews.
Skill Claude CodeCodex
This skill should be used when users want to couple MaxwellLink to the MaxwellLink-aware DFTB+ fork via the MaxwellLinkSocket block, including real-time Ehrenfest dynamics, VelocityVerlet Born-Oppenheimer MD, dipole-derivative choices, build/install, and TCP/UNIX socket connection patterns.
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: