39 tagged spatial, measured the same way as everything else here.
Skill Claude CodeCodex
Panel design for DEVELOPING / dynamic systems (embryonic organs, differentiation, regeneration). The target experiment is usually a LATE / terminal stage, but the biology is a trajectory: terminal cell types are end-products of earlier lineage programs. A panel built from the target stage alone resolves terminal…
Skill Claude CodeCodex
End-to-end workflow for gene panel design in scRNA-seq and spatial transcriptomics, that should be STRICTLY followed: dataset understanding + smart downsampling + train/test splits, algorithmic selection (HVG/DE/RF/scGeneFit/SpaPROS), optimal sub-panel discovery (ARI vs size), biological completion with a stability…
Skill Claude CodeCodex
Build and diagnose visionOS projects with Seiro MCP. Use inspectxcodeschemes (if needed) -> validatesandboxpolicy -> buildvisionosapp -> inspectbuilddiagnostics (on failure) -> fetchbuildoutput (on success), and avoid direct xcodebuild or swiftc unless the user explicitly asks for shell-level execution or MCP cannot…
Skill Claude CodeCodex
Differential expression analysis — find marker genes for clusters or compare two groups. Supports Wilcoxon rank-sum, t-test, and PyDESeq2 methods with publication-ready figures and CSV tables.
Skill Claude CodeCodex
Identify tissue regions and spatial niches from preprocessed spatial transcriptomics data using Leiden, Louvain, SpaGCN, STAGATE, GraphST, or BANKSY.
Skill Claude CodeCodex
Identify spatial domains with DeepST or PearlST. This skill is directory-only: use --input /path/to/sample for single-sample runs; use --mode integration --input-list samples.txt only with DeepST.