Scientific

dgilford/ai-science-toolkit

Plugin Claude Code

Bundles 21 skills, 4 agents · 1,933 tokens together

Claude Code skills and domain-expert reviewer subagents for AI-assisted scientific computing.

GordenSun/Math2GGB

Skill Claude CodeCodex

A method for turning a maths problem, especially a geometry problem, into GeoGebra files. GeoGebra is software for creating and exploring interactive mathematical diagrams.

yorkeccak/scientific-skills

Plugin Claude Code

Bundles 13 skills · 367 tokens together

Scientific literature search skills for Claude using Valyu API - PubMed, arXiv, ChEMBL, DrugBank, bioRxiv, medRxiv, and more.

Jasper0122/CLI-Anything-Arcgis-Pro

Skill Claude CodeCodex

Drive ArcGIS Pro (ArcPy) from the command line — professional cartographic export (layouts + Map Series / map books), geoprocessing, batch processing, and feature-class query/edit. Also ships a live-Pro MCP bridge that lets an agent operate the OPEN ArcGIS Pro session (the closed-source counterpart to CLI-Anything's…

sadassimov/geemu-skill

Skill Claude CodeCodex

Use when Codex needs to answer questions or write Python code for Google Earth Engine (GEE), the Earth Engine Python API, geemap, ee.Image/ImageCollection/FeatureCollection workflows, remote-sensing scripts, exports, reducers, cloud masking, dataset lookup, or Liu Zhao's local GEE/geemap knowledge and practical…

Jerry-del975/ai-zemax-optical-design

Skill Claude CodeCodex

Automated optical design agent for Ansys Zemax OpticStudio 2024 R1 through ZOS-API. Use when Codex should automatically turn optical requirements or an existing .zmx/.zos/.zar file into an executable Zemax design loop: parse requirements, create or load a lens model, run baseline analyses, choose variables and…

NVIDIA-Omniverse/kit-cae

Skill Claude CodeCodex

Visualize and analyze simulation data using NVIDIA Kit-CAE (Omniverse). Supports native CAE USD-plugin formats including CGNS, VTK, EnSight Gold, OpenFOAM, NumPy, EDEM, NanoVDB, FLASH AMR, Eclipse reservoir data, and Trimesh assets. Covers volume rendering, faces, geometry and volume slices, iso-surfaces, streamlines…

ykdojo/paper-search

Plugin Claude Code

Bundles 1 skill · 39 tokens together

Search academic papers via OpenAlex — find papers by keyword, look up details by DOI, with pagination and sorting.

Laboratoire-de-Chemoinformatique/SynPlanner

Skill Claude CodeCodex

Plan retrosynthetic routes, curate reaction data, extract reaction rules, train retrosynthesis policy and value networks, and analyse synthetic routes with the installed SynPlanner package. SynPlanner is built on chython (chython-synplan, formerly CGRtools), not RDKit. Use when the user imports synplan., asks for a…

jmschrei/cherimoya

Skill Claude CodeCodex

Train, evaluate, and use Cherimoya sequence-to-function genomic models with the cherimoya command-line tools or Python API. Use when a user wants to run the end-to-end pipeline, use a trained model to do downstream tasks, or troubleshoot a run. Designed for users who may be new to Cherimoya or to sequence modeling…

shanselman/nightscout-cgm-skill

Skill Claude CodeCodex

Analyze CGM blood glucose data from Nightscout. Use this skill when asked about current glucose levels, blood sugar trends, A1C estimates, time-in-range statistics, glucose variability, or diabetes management insights.

1anj/academic-integrity-skill

Skill Claude CodeCodex

An academic-integrity self-review skill for checking research papers, revisions, and published-work concerns for possible data, image, statistical, or reporting problems.

ashuiGordon/stata-cli

Skill Claude CodeCodex

Run Stata commands, .do files, view data, inspect results, and get help from the terminal. Wraps PyStata with a daemon mode for fast execution. Built-in Stata reference library with 57 topics. Designed for AI agents.

htylab/tigerbx

Skill Claude CodeCodex

Use TigerBx 0.2.3+ for research-use neuroimaging workflows: T1w brain extraction and segmentation, HLC parcellation, registration, VBM, EPI/DTI distortion correction, NERVE embeddings, and image metrics. Trigger when choosing or calling tigerbx Python APIs/CLI, interpreting outputs or labels, or building TigerBx batch…

myzhao0114-del/scientific-figure-skill

Skill Claude CodeCodex

Create publication-grade scientific figures and analysis deliverables from tabular data. Use when the user provides Excel, CSV, or similar structured data and wants charts, plotting, exploratory analysis, figure polishing, statistical annotations, captions, or a report suitable for a paper, thesis, dissertation, lab…

AlexWortega/claude-autoresearch-skill

Skill Claude CodeCodex

Autonomously research an ML task and run MANY bounded experiments to find the best config — a fixed-budget edit→train→eval→keep-or-discard loop in the spirit of karpathy/autoresearch, wrapped in the ml-intern orchestrator model and fanned out with a Claude Code dynamic workflow. Runs LONG: an iterative generational…

monarch-initiative/dismech

MCP server Claude Code

One of 2 in .mcp.json

MCP for retrieving things from the Ontology Lookup Service. Runs locally from the ols-mcp Python package.

SteadfastAsArt/geoscience-skills

Skill Claude CodeCodex

Spatial and spatiotemporal regression with GNNWR (Geographically Neural Network Weighted Regression). Use when Claude needs to: (1) Build spatially varying coefficient regression models, (2) Analyze geographic non-stationarity in spatial data, (3) Generate spatial coefficient maps for publication, (4) Run…

Norman-bury/reduce-ai-style-writing

Skill Claude CodeCodex

A rewriting aid for Chinese academic writing, including papers, abstracts, introductions, methods, results, and limitations. It aims to reduce signs that text was generated by AI while keeping the original terminology, facts, citations, data limits, and argument structure.

NVIDIA-BioNeMo/boltz-cp

Plugin Claude Code

Bundles 10 skills, 2 hooks · 1,462 tokens together

Integrate DTensor-based context parallelism (CP) into a custom co-folding / structure-prediction model — sharding the O(N²) pair and attention tensors across a multi-GPU device mesh via explicit ring/transpose collectives. A top-level cpizemodelworkflow conductor prioritizes, sequences, and gates the whole effort end.

BAOXI11/thesis-flowchart

Skill Claude CodeCodex

Create, revise, normalize, and validate thesis-ready flowchart figures for undergraduate theses, graduation projects, dissertations, and academic papers. Use when users ask to draw or convert thesis/graduation-project process descriptions, algorithm steps, system workflows, business processes, experimental protocols…

kgraph57/paper-writer-skill

Skill Claude Code

Medical/scientific paper writing workflow skill. Manages the full pipeline from literature search to submission-ready manuscript. Creates and manages a project directory with IMRAD-format section files, literature matrix, reference management, and quality checklists. Supports both English and Japanese papers.…

zifangchen/skill-find-papers

Skill Codex

Find, rank, summarize, and track high-quality research papers with Scholar MCP, accept user-submitted PDFs, DOIs, or links through a persistent local inbox as special-interest signals, then create evidence-rich bilingual Feishu deep-read documents with detailed abstracts, contributions, methods, figures, and verified…

a-latyshev/dolfinx-external-operator

Skill Claude CodeCodex

Provides contextual assistance, triggers, and guidelines for pair-programming on the dolfinx-external-operator repository, covering setup, analytical derivations, variational formulations, subdomains, mixed function spaces, and workarounds.