534 projects whose own agent configuration covers scientific. These are not mods to install — they are how the maintainers of these repositories tell an agent what to do, and what to avoid.
All projects Building agents7,374Claude Code6,573Data and AI3,706Backend and APIs3,486Languages3,398Planning3,181Git and workflow3,100Code review2,701Memory and context2,354Testing2,311Research2,292DevOps and cloud2,282
Any agent Claude CodeCodexOpenCodeGitHub CopilotGemini CLICursorWindsurfKiro
| Project | Stars | Configures | Files | Always loaded |
|---|---|---|---|---|
| QinxiangCao/QualifiedCProgramming QCP (Qualified C Programming), a C program verification tool | 43 | Claude Code, Codex, OpenCode | 7 | 4,998 tok |
| dhicoc/wuyun-liuqi-skills Five Movements and Six Qi Skills Router — AI auto-routing + deterministic calculation engi | 41 | Claude Code, Codex, OpenCode | 3 | 1,562 tok |
| Karel0001/old-school-academic-writer | 40 | Claude Code | 1 | — |
| Katagiri-Hoshino-Lab/VibeCodeHPC CLI-based multi-agents for Auto-Tuning (e.g. HPC code optimazation loops) supporting Local | 39 | Claude Code | 1 | 1,693 tok |
| pentoai/ml-ralph Autonomous ML agent for running experiments using Claude. | 39 | Claude Code | 2 | 770 tok |
| yusong652/flac-mcp pypi.org MCP server connecting AI agents to ITASCA FLAC — run continuum simulations through natural | 39 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 3,549 tok |
| Patrick-Healy/tikz-diagrams-skill | 39 | Claude Code, Codex, GitHub Copilot, Gemini CLI, OpenCode | 5 | 589 tok |
| alxyrgin/health-os glake.ai Personal health management system on Claude Code: 14 AI doctors, mandatory debate among sp | 38 | Claude Code | 41 | 6,682 tok |
| TheDigitalNinja/mcp-fitbit thedigital.ninja Give your AI assistant access to your Fitbit data for personalized health insights, trend | 33 | Claude Code, GitHub Copilot | 2 | 2,104 tok |
| jenkinsm13/metashape-mcp AI-powered photogrammetry automation — MCP server for Agisoft Metashape Professional 2.3+. | 33 | Claude Code | 1 | 1,106 tok |
| Impertio-Studio/QGIS-Claude-Skill-Package 19 deterministic Claude Code skills for QGIS/PyQGIS spatial analysis, map creation, geopro | 33 | Claude Code | 1 | 2,801 tok |
| siqiliu-tsinghua/mma-mcp A MCP server that wraps a local Wolfram Engine, enabling AI assistants (Claude, ChatGPT, e | 32 | Claude Code | 1 | 2,190 tok |
| NatLabRockies/openstudio-mcp | 31 | Claude Code, Codex, OpenCode | 19 | 2,866 tok |
| yuema137/scientific-eval-environments Live Knowledge Base of LLM Agents for Science | 29 | Claude Code | 1 | 2,977 tok |
| estevesjh/mcp-ads-arxiv MCP server for Claude: Read scientific papers from LaTeX source, not PDFs. NASA ADS search | 28 | Claude Code | 1 | 1,415 tok |
| ai-freer/fortune-skill Chinese traditional fortune-telling AI skill (BaZi 八字 + Zi Wei Dou Shu 紫微斗数) for Claude Co | 28 | Claude Code, Codex, OpenCode | 2 | 1,467 tok |
| ProfSynapse/Synaptic-Tuner | 27 | Claude Code, Codex, OpenCode | 14 | 6,355 tok |
| u9401066/pubmed-search-mcp u9401066.github.io MCP SDK v2 server for PubMed and multi-source biomedical research, with resilient search, | 27 | Claude Code, Codex, GitHub Copilot, OpenCode | 45 | 8,398 tok |
| nebius/nebius-physical-ai | 27 | Claude Code, Codex, Cursor, OpenCode | 3 | 5,768 tok |
| iowarp/clio-kit toolkit.iowarp.ai Bringing AI practically to science! | 26 | Claude Code | 1 | 4,847 tok |
| phisanti/MCPR phisanti.github.io MCPR enables AI agents to participate in interactive R sessions for professional analysis | 26 | Claude Code, Codex, OpenCode | 2 | 3,219 tok |
| friendsofstrandseq/mosaicatcher-pipeline friendsofstrandseq.github.io Integrated workflow for SV calling from single-cell Strand-seq data | 26 | Claude Code, Gemini CLI | 3 | 4,892 tok |
| ammawla/encode-toolkit MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — | 24 | Claude Code | 2 | 2,387 tok |
| ai4curation/ai-gene-review ai4curation.github.io Demonstration of AI review of existing functional annotations | 24 | Claude Code, Codex, GitHub Copilot, OpenCode | 22 | 6,891 tok |
| Cenrax/researchswarm An agentic system that reads research papers (local PDFs or arXiv), generates implementati | 24 | Claude Code | 15 | — |
| filippovarini/community-fish-detector-dataset | 24 | Claude Code | 2 | 739 tok |
| lynnlangit/precision-medicine-mcp Precision Medicine MCP Platform: A set of bioinformatics servers + tools - production mult | 24 | Claude Code | 2 | 1,744 tok |
| Intersect-Collaborations-LLC/research-workflow-assistant Open-source AI research assistant for VS Code + GitHub Copilot. Connects to PubMed, OpenAl | 24 | Claude Code, GitHub Copilot | 13 | 7,170 tok |
| tianbing1230/CFPS-Panel-Data-Cleaning-Pipeline CFPS panel data cleaning workflow, with extensive cross-wave harmonization and imputation | 24 | Claude Code, Codex, OpenCode | 2 | 1,965 tok |
| ThibautBaissac/kb-physics thibautbaissac.github.io A personal LLM-maintained knowledge base | 23 | Claude Code | 6 | 1,121 tok |
| HaipingXu/social-science-claude-scholar Claude Code configuration for social science research (Economics & Political Science) — 42 | 23 | Claude Code | 1 | 4,489 tok |
| ml-jku/conglude | 23 | Claude Code | 4 | — |
| Lex669/LumericalFDTD-skill A skill for automating Lumerical FDTD simulations | 23 | Claude Code | 1 | 1,620 tok |
| awslabs/llm-evaluation-system Agentic AI-guided evaluation system for comparing LLMs with multi-judge jury scoring | 23 | Claude Code, Codex, OpenCode | 5 | 7,551 tok |
| Jeffisgod/Agri-CV-Research An AI-powered agricultural CV research framework automating the full pipeline from literat | 23 | Claude Code | 1 | 370 tok |
| DexRobot/dexrobot_isaac Isaac Gym environments and training for DexHand | 23 | Claude Code | 1 | 5,362 tok |
| rippleshe/sciplot-academic Chinese scientific research plotting library | Nature/IEEE styles | pastel/earth/ocean col | 23 | Claude Code, GitHub Copilot | 2 | 2,979 tok |
| jinyh/nsfc-review A simulated peer-review self-check tool specifically designed for National Natural Science | 23 | Claude Code | 1 | — |
| lianxhcn/stata-ai lianxhcn.github.io using Stata with AI-Agent | 23 | Claude Code | 1 | 1,255 tok |
| moudrkat/steeropathy Agents that talk through model internals — activations & J-space — instead of text. No wor | 22 | Claude Code | 1 | — |
| llorracc/SolvingMicroDSOPs Christopher Carroll's Lecture Notes on Solving Microeconomic Dynamic Stochastic Optimizati | 22 | Claude Code, Codex, OpenCode | 2 | 1,794 tok |
| EthereumPhone/PQ1 | 22 | Claude Code, Codex, OpenCode | 3 | 15,994 tok |
| cpuguy96/StepCOVNet Deep Learning to Create StepMania SM FIles | 22 | Claude Code, Codex, Cursor, OpenCode | 12 | 1,611 tok |
| eigenbau/mcp-snomed-ct MCP server for SNOMED CT concept lookup via any FHIR R4 terminology server | 21 | Claude Code | 1 | 896 tok |
| mohsenhariri/scorio mohsenhariri.github.io Bayes@N [ICLR'26], Ranking LLMs [ACL'26 Main]: Statistical evaluation, comparison, and ran | 21 | Claude Code, Codex, OpenCode | 2 | 4,044 tok |
| findalexli/ai-scientist-v3 | 21 | Claude Code | 5 | — |
| bigdataviewer/bigdataviewer-playground | 21 | Claude Code | 1 | 1,184 tok |
| Beneficial-AI-Foundation/FloatSpec Formally Verified Float Implementation with lean4 | 21 | Claude Code, Codex, OpenCode | 2 | 7,741 tok |
| MattArtzAnthro/gephi-ai mattartz.me Extends Gephi with AI capabilities. Includes a Gephi plugin for graph analytics, an MCP se | 21 | Claude Code, Codex, Gemini CLI, OpenCode | 3 | 2,678 tok |
| yang3kc/daily_arxiv_digest Daily digest of interesting arXiv papers — an unattended LLM pipeline for cron, plus a zer | 21 | Claude Code, Codex, OpenCode | 2 | 1,792 tok |