12,531 tagged Scientific, measured the same way as everything else here.
Browse within: bioinformatics 258ai-scientist 209LLM 185agents 185biology 166reasoning-language-models 165ai-scientists 164reasoning-agent 164tool-use 164agent 158data-analysis 129cancer-genomics 128computational-biology 128literature-review 120
Skill Claude CodeCodex
Use when answering questions with STRING database MCP tools for protein-protein interactions, interaction partners, network images, interactive STRING links, evidence pages, functional enrichment, PPI enrichment, functional annotations, proteins associated with terms, homologs, sequence search, species lookup, or…
Skill Claude CodeCodex
Use when the user asks to critique, peer-review, appraise, assess the credibility of, or evaluate the methodology, statistics, or bias of a single dental or oral-health research paper. Use for RCTs including split-mouth, cluster, and crossover designs; observational studies; diagnostic accuracy studies; systematic…
ElmatadorZ/alternative-coffee-claudeskill
Skill Claude CodeCodex
Alternative Slowbar coffee intelligence — scientific analysis from seed to cup using First Principle + System Thinking. Covers: varieties, terroir, cultivation, disease diagnosis, processing, roasting physics/chemistry, extraction science, brewing, business strategy, storytelling. ALWAYS trigger for coffee-related…
haoyu-haoyu/scientific-writing-skill
Skill Claude Code
Analyze, critique, restructure, and polish scientific manuscripts for any major academic venue. Covers Nature/Science/Cell, Lancet/NEJM/BMJ, IEEE/ACM, NeurIPS/ICML/ICLR, AMIA/CHIL/MLHC, Elsevier/Springer, and interdisciplinary health informatics venues. Use when asked to "review my paper", "polish this section"…
TianchenGuan/duke-cs-cluster-skill
Skill Claude CodeCodex
Trigger before submitting any Slurm job (sbatch/srun), when diagnosing why a job failed to schedule, or when choosing GPU types, partitions, storage paths, or resource limits on the Duke CS compute cluster. Do NOT trigger for non-Slurm tasks or clusters other than Duke CS.
SFETNI/Deep-Matter-Chem-Skills
Skill Claude CodeCodex
This skill covers quantitative post-processing of atomistic molecular dynamics trajectories: loading and preprocessing trajectories from LAMMPS, GROMACS, or ASE; computing structural observables (RDF, coordination numbers, angular distributions, bond orientational order, common-neighbor analysis, centrosymmetry…
Skill Codex
Start, orchestrate, or resume an autonomous research project through hierarchical EXPERIMENT, WRITE, and REVIEW gates. Use when running a project from a rough idea to a complete paper, recovering after context loss, deciding which gate or inner loop must run next, auditing whether a specialist loop actually completed…
dungnotnull/mountain-landslide-early-warning-agent-skill
Skill Claude CodeCodex
The skill system follows a skill-registry pattern with a chain-of-thought router. Skills are declarative descriptors (metadata + I/O schemas + optional handler) registered in a single registry. The router scores skills against an intent, emits a rationale, and returns an ordered dispatch plan. The orchestrator…
Skill Claude CodeCodex
Activate when an agent must parse high-throughput screening plate-reader data, reconcile plate maps, detect row/column/edge artifacts, normalize inhibition or activation assays, calculate Z-prime or robust Z-prime, compute robust z-scores or B-scores, assess replicate concordance, control false discoveries, call…
WendyAi2005/codex-comsol-bridge
Skill Claude CodeCodex
Use this skill for Codex-to-COMSOL automation through MathWorks MATLAB MCP Server and COMSOL LiveLink for MATLAB. It connects two mature, officially supported integration paths into one community-built workflow with native COMSOL model access, task-level local execution, compact result return, same-server Desktop…
Skill Codex
Always invoke this skill when the user wants a conclusion, concluding section, final paper section, paper ending, or 结论 for an economics manuscript—including requests to read an empirical, theoretical, or structural economics paper and write a ready-to-use English conclusion. Use it to draft, rewrite, shorten, audit…
darellchua2/opencode-config-template
Skill OpenCode
Submission-ready engineering papers via the Horseshoe Diagram Method — mirrored Intro/Conclusion, Methods/Results bridge, journal conventions. Triggers: horseshoe paper, journal paper draft.
QWarranto/leafengines-claude-mcp
Skill Claude CodeCodex
Soil analysis, crop recommendations, farm optimization, and sensor validation for agricultural professionals. Use this skill whenever users ask about soil data, crop selection, farm profitability, planting schedules, sensor calibration, or agricultural optimization. Make sure to use this skill whenever the user…
AravindKurapati/claude-best-practices
Skill Claude Code
Researches computational pathology and health AI literature using HuggingFace Papers MCP and Exa web search. Use when user says "find papers on", "research", "what's the latest on", "literature review", "survey", or asks about methods like MIL, SSL, WSI analysis, attention-based pooling, patch embedding, weakly…
Skill Claude CodeCodex
Publication-quality plotting for power electronics / electrical engineering: IEEE-paper-grade figures via matplotlib (3.5in single-column or 7.16in double-column, 8pt, 600dpi PNG, no in-figure title). Covers waveforms (switching, DAB, multi-channel, double-pulse, resonant, three-phase), efficiency curves, loss…
NguyenAn2812/scientific-research-helper
Skill Claude CodeCodex
Supports the entire scientific research process in English, designed for undergraduate and graduate students across all disciplines. Activate this skill when the user: - Wants to brainstorm research topics, identify research questions, or define research objectives - Asks about the structure of academic papers…
Skill Claude CodeCodex
Adapts evidence synthesis workflows for environmental, ecological, biomedical, and life-science questions. Use for PECO/PICO frameworks, exposure-outcome reviews, ecological heterogeneity, dose-response evidence, risk-of-bias planning, environmental indicators, NDVI or vegetation-index models, partial least squares…
Skill Claude CodeCodex
Predicción de riesgo térmico personalizado (calor/frío) con ensemble conformal, factores científicos, MCP tools y bot Telegram determinista. El sistema prioriza automáticamente fine-tuned → raw 7B → raw 1.5B → bot sin LLM.
Yinzhanqing/embodied-eval-automation
Skill Codex
Plan, explain, build, run, monitor, validate, transfer, and audit reproducible embodied-model studies and batch episode collection. Use when a user wants to connect a local, SSH, or cloud GPU host; understand and compare a policy, VLA, world model, world-action model, or hybrid with a benchmark; discover and reuse…
Skill Codex
Design, simulate, and render kind-scoped SPICE/PCB/analog-IC schematics with ngspice and netlistsvg for the Vibe Analog project canvas. Use when designing circuits, creating or simulating SPICE netlists, rendering schematics, optimizing automatic schematic placement/routing with a vision-only model, checking layout…
htlin222/research-guardian-skill
Skill Claude CodeCodex
A research-quality checking system for AI agents. It verifies facts, compares literature, checks experiment designs, and reviews claims about new findings.
Conradgui/Academic-Paper-Review-Skill
Skill Codex
Use when reviewing, proofreading, auditing, or authorially polishing scientific and technical manuscripts in Markdown, DOCX, PDF, LaTeX, or plain text; checking research logic, methods, evidence, citations, reference relevance or duplication, AI-trace candidates, text clarity, terminology, style consistency, or…
Skill Claude Code
Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process with (1) section outlines with key points using research-lookup then (2) convert to flowing prose. IMRAD structure, citations (APA/AMA/Vancouver), figures/tables, reporting…
Skill Claude CodeCodex
Expert guidance for the collapse R package (v2.x) — fast, class-agnostic data transformation and statistical computing in R, and the core of the fastverse. Covers the Fast Statistical Functions (fmean/fsum/fmedian/fmode/fnth/fndistinct … with their g/w/TRA arguments), grouping objects (GRP, qF, qG, group, fgroupby…
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