Scientific

15,169 mods in this category, of every kind an agent can take. Each one carries what it costs per session, what the scan found, and whether it is the original.

object-annotation

505

LIhong42/object-annotation

Skill Claude CodeCodex

An image-annotation workflow for creating COCO detection and instance-segmentation labels for selected object categories in one image. COCO is a common format for training and evaluating computer-vision models.

not rated 16 +5 28d ago A 110 tokens

Jill0099/causal-inference-mixtape

Skill Claude CodeCodex

This skill should be used when the user asks to "implement a DiD regression", "run a staggered difference-in-differences", "set up an event study", "implement IV / 2SLS", "run a regression discontinuity design", "build synthetic control", "do propensity score matching", "test parallel trends", "run Honest DiD", "wild…

not rated 16 28d ago A 209 tokens original MIT

HolobiomicsLab/asb-skill-collections

Skill Claude CodeCodex

Use when when you have aligned ChIP-Seq reads (single-end BED or paired-end BEDPE format) and need to identify enriched genomic regions by comparing ChIP signal against control background, with the ability to customize fragment length estimation, local bias calculation, and peak score thresholds.

not rated 15 3d ago A SkillSpector: pass 66 tokens original Apache-2.0

arcgis-mcp-bridge

508

muend/arcgis-mcp-bridge

Skill Claude CodeCodex

Secure local-first MCP server for ArcGIS Pro / ArcPy geoprocessing. Exposes 100 declarative ArcPy tools to MCP-compatible clients such as Claude Desktop and Cursor through stdio JSON-RPC. Use when operating local ArcGIS Pro data, running ArcPy/geoprocessing, managing geodatabases, projecting vector/raster data…

not rated 15 1mo ago A 202 tokens original Apache-2.0

biomed-research

509

nickzren/biomed-agent

Skill Claude CodeCodex

Use when answering biomedical research questions that need source-backed evidence from local MCP servers, including gene, disease, drug, variant, phenotype, study, or clinical-trial questions.

not rated 15 3mo ago A 39 tokens original Apache-2.0

enrichr-mcp-server

510

tianqitang1/enrichr-mcp-server

Plugin Claude Code

Bundles 1 skill, 1 MCP server · 116 tokens together

Gene set enrichment analysis via the Enrichr API: MCP tools for enrichment and library discovery, plus an enrichr-api skill for raw API work the tools do not cover (reverse gene lookup, library download, batch enrichment).

not rated 15 1mo ago A tokens not measured

kisti-mcp

511

ansua79/kisti-mcp

MCP server Claude CodeCodexCursor +2

KISTI-MCP Server - MCP server for KISTI OpenAPI (ScienceON, NTIS, DataON). Runs locally from the kisti-mcp Python package.

not rated 15 2mo ago A tokens not measured

mcpymol

512

chemrich/MCPymol

MCP server Claude CodeCodexCursor +2

A conversational MCP server interface for PyMOL protein visualization. Runs locally from the mcpymol Python package.

not rated 15 2d ago A tokens not measured original MIT

aringadre76/mcp-for-research

MCP server Claude CodeCodexCursor +2

Consolidated MCP server for scholarly research across PubMed, ArXiv, Google Scholar, and JSTOR (5 powerful tools instead of 24). Runs locally from the scholarly-research-mcp npm package.

not rated 15 4mo ago A tokens not measured original MIT

inno-paper-reviewer

514

dgtql/FundaPod

Skill Claude Code

Structured manuscript/grant review with checklist-based evaluation. Use when writing formal peer reviews with specific criteria methodology assessment, statistical validity, reporting standards compliance (CONSORT/STROBE), and constructive feedback. Best for actual review writing, manuscript revision. For evaluating…

not rated 15 +2 2mo ago A 74 tokens

geo-infer

515

ActiveInferenceInstitute/GEO-INFER

Skill Claude CodeCodex

Geospatial Active Inference framework with 45 modules for ecological, civic, and commercial spatial analysis. Use when working with geospatial data, Active Inference, Bayesian modeling, H3 hexagonal indexing, spatial statistics, or any domain-specific geographic analysis (agriculture, health, economics, risk, climate…

not rated 15 changed yesterday A 76 tokens

proteomics

516

MannLabs/proteomics-agent-skills

Plugin Claude Code

Bundles 11 skills · 689 tokens together

Transform proteomics search-engine output tables into high-confidence biological insights using best practices: data reading, quality control, normalization, imputation, batch-effect correction, differential expression analysis, and biological interpretation.

not rated 14 1mo ago A tokens not measured original Apache-2.0

sagemath

517

XBP-Europe/sagemath-mcp

MCP server Claude CodeCodexCursor +2

Model Context Protocol server that provides stateful SageMath computations. Runs locally from the sagemath-mcp Python package.

not rated 14 yesterday A tokens not measured original MIT

papersflow

518

papersflow-ai/papersflow-mcp

MCP server Claude CodeCodexCursor +2

Academic research MCP server for paper search, citation checks, graphs, and deep research. Remote server at doxa.papersflow.ai.

not rated 14 6mo ago A tokens not measured original MIT

audit-oe

519

htlin222/audit-oe-skill

Skill Claude CodeCodex

Audit OpenEvidence MCP citations with transitive citation detection, cross-citation contradiction scanning, provenance analysis, and multi-dimensional accuracy scoring.

not rated 14 4mo ago A 29 tokens original MIT

mcp-lammps

521

Chenghao-Wu/MCP_LAMMPS

MCP server Claude CodeCodexCursor +2

MCP server "mcp-lammps" as configured in Chenghao-Wu/MCPLAMMPS. Runs locally from the mcp-lammps Python package.

not rated 14 8mo ago A tokens not measured original Apache-2.0 archived

copernicus-mcp

522

CliDyn/copernicus-mcp

MCP server Claude CodeCodexCursor +2

MCP server for safe, validated, reproducible access to Copernicus environmental data. Runs locally from the copernicus-mcp Python package.

not rated 14 1mo ago A tokens not measured original BSD-3-Clause

pubcrawl

523

nickjlamb/pubcrawl

MCP server Claude CodeCodexCursor +2

PubMed & Europe PMC literature search, US/UK drug labelling, and clinical trials for AI assistants. Runs locally from the @pharmatools/pubcrawl npm package. Needs 1 environment variable to run.

not rated 14 7d ago A tokens not measured original MIT

geoai

524

muend/geoai-skills

Plugin Claude Code

Bundles 18 skills · 2,017 tokens together

18 Agent Skills covering the full geospatial data science lifecycle: data engineering, remote sensing, Earth Engine, deep learning, spatial statistics, geostatistics, terrain, networks, LiDAR, trajectories, change detection, MCDA, PostGIS, cartography, and guarded ArcGIS Pro automation.

not rated 14 +3 changed 5d ago A tokens not measured original MIT

sci-diagram-pptx

525

SciToolsmith/sci-diagram-pptx

Skill Codex

Reconstruct or repair user-provided scientific and academic schematics as visually faithful, native editable PowerPoint (.pptx) files with executable build source; also inspect existing PPTX files for meaningful fidelity and editability defects. Use for…

not rated 14 +5 11d ago A 165 tokens original Apache-2.0

simulink-layout-tidy

526

calebzu/pmsm-control-claude-skills-for-matlab

Skill Claude Code

Tidy the layout of an already-built Simulink model — make it compact and readable, remove block overlaps and lines that cut through blocks, and honestly minimize line-line crossings without ever falsely promising zero. Quantifies block overlaps, line-through-block hits, line-line crossings, model extent, and graph…

not rated 13 2mo ago A 190 tokens original Apache-2.0

dazhiyang/scientific-plotting-skill

Skill Claude CodeCodex

Use when the user asks to plot for the paper, make a manuscript or journal figure, export a publication or thesis PDF, or prepare supplementary vector graphics—in R with ggplot2 only or Python with plotnine only. Enforces vector PDF, 85 mm and 180 mm widths, one Times text size with no plot title, Wong discrete…

not rated 13 4mo ago A 104 tokens original MIT

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