12,427 tagged Scientific, measured the same way as everything else here.
Browse within: bioinformatics 260ai-scientist 207LLM 186agents 186biology 170reasoning-language-models 165ai-scientists 164reasoning-agent 164tool-use 164agent 159data-analysis 133cancer-genomics 132computational-biology 132literature-review 120
ActiveInferenceInstitute/GEO-INFER
Skill Claude CodeCodex
Geospatial Active Inference framework with 45 modules for ecological, civic, and commercial spatial analysis. Use when working with geospatial data, Active Inference, Bayesian modeling, H3 hexagonal indexing, spatial statistics, or any domain-specific geographic analysis (agriculture, health, economics, risk, climate…
Skill Claude CodeCodex
Audit OpenEvidence MCP citations with transitive citation detection, cross-citation contradiction scanning, provenance analysis, and multi-dimensional accuracy scoring.
Skill Claude CodeCodex
This document describes the Leeroopedia MCP tools available during the with-KB benchmark run. It is a standalone reference and is not fed to the agents automatically.
calebzu/pmsm-control-claude-skills-for-matlab
Skill Claude Code
Tidy the layout of an already-built Simulink model — make it compact and readable, remove block overlaps and lines that cut through blocks, and honestly minimize line-line crossings without ever falsely promising zero. Quantifies block overlaps, line-through-block hits, line-line crossings, model extent, and graph…
dazhiyang/scientific-plotting-skill
Skill Claude CodeCodex
Use when the user asks to plot for the paper, make a manuscript or journal figure, export a publication or thesis PDF, or prepare supplementary vector graphics—in R with ggplot2 only or Python with plotnine only. Enforces vector PDF, 85 mm and 180 mm widths, one Times text size with no plot title, Wong discrete…
Skill Claude CodeCodex
Use NEPA-MCP for project-area environmental screening, biological and cultural resources, jurisdiction, soils, protected lands, flood risk, air quality, and regulatory research.
GEUConn/research-idea-workflow-skill
Skill Claude CodeCodex
This skill guides materials engineering researchers through four structured stages — from a raw idea to a fully planned experiment — with human-in-the-loop confirmation at each critical checkpoint.
Skill Claude CodeCodex
Use when the user asks Codex, Claude Code, ChatGPT-style coding agents, or another AI agent to automate, inspect, run, or debug Abaqus through sim-cli. Supports Abaqus/CAE noGUI workflows, batch jobs, model inspection, ODB diagnostics, bounded execution, artifact reporting, and troubleshooting. Requires a user-owned…
Skill Claude CodeCodex
Use when Experiment must build, run, compare, or record reproducible ML/AI paper experiments locally or through the Research Assistant-configured ssh-bash tool and verified SSHFS workspace, including baselines, datasets, controlled trials, multi-seed formal evidence, ablations, and results promotion. Examples: user…
ericluo04/claude-academic-workflow
Skill Claude CodeCodex
Design, estimate, validate, and write up a difference-in-differences analysis, using the post-2018 heterogeneity-robust toolkit with an explicit statement of which parallel-trends assumption is imposed. TRIGGER on "difference-in-differences", "DiD", "TWFE", "event study", "staggered adoption", "parallel trends"…
Skill Claude Code
Guide for using the LESS radiative transfer model via pyLessSDK. Use when the user asks to create, configure, or run LESS simulations, set up scenes with vegetation/terrain, configure sensors (orthographic, perspective, fisheye, LiDAR, TRAC, photon tracing), define optical properties, or post-process simulation…
robustagile/six-sigma-in-r-skill
Skill Claude CodeCodex
Generates R implementations for Six Sigma / statistical-process-control tasks — control charts (X-bar R, I-MR, P, NP, C, U), process capability (Cp/Cpk/Pp/Ppk), DPMO and sigma level, Pareto and run charts, histograms, box plots, scatter/regression, correlation, hypothesis tests (1- and 2-sample t, proportion…
Skill Claude CodeCodex
Reviewer-gated extraction skill for deriving L2 structured artifacts from ingested normalized sources. Runs MCP terminology enrichment, presents batch proposals for human review, records decisions via concept review CLI, and writes finalized topics/ /structured/concepts/concepts.yaml plus an extract plan that includes…
Skill Claude Code
A Chinese-language assistant for turning a Melodie agent-based model design into code, test data, and documentation. Melodie is a framework for building simulations whose individual entities interact over time.
Skill Claude CodeCodex
Move fast AND rigorously through the full AI/ML research loop: framing a testable hypothesis, reviewing the literature, reproducing a baseline, designing leak-free experiments, tracking runs, analyzing results honestly, and writing up. Use this whenever the user is doing machine-learning or AI research — reading or…
Skill Claude CodeCodex
Use when and ONLY when the user explicitly requests paper writing and G4 (write-ready) gate has passed — handles LaTeX structure, senior-level writing, reference verification, and iterative refinement.
Skill Claude CodeCodex
Central hub for academic paper writing with selectable author styles. Use when the user asks to write, revise, evaluate, or distill any section of an academic paper.
LeiGao0203/R-Medical-Statistics-Skills
Skill Claude CodeCodex
An R-language guide for logistic regression, a statistical method for modeling outcomes such as yes/no results or categories from one or more predictors. It covers several logistic regression types and ways to interpret and assess the models.
Skill Claude CodeCodex
Analyze DNA/RNA/protein sequences and optionally probe UniProt for homology. Use when user provides FASTA format or raw sequence.
13muyoung-crypto/acaflow-review-generator
Skill Claude CodeCodex
A workflow for producing a Chinese scientific review article from mapped and retrieved research literature. It uses acaflow to map papers and QingHydrogen to search for references for each topic branch.
Skill Codex
An image-to-editable-SVG tool for research figures, method diagrams, architecture diagrams, and flowcharts. SVG is a vector image format whose parts can be edited individually in tools such as Figma.
Skill Claude CodeCodex
An image-annotation workflow for creating COCO detection and instance-segmentation labels for selected object categories in one image. COCO is a common format for training and evaluating computer-vision models.
Skill Claude CodeCodex
Write correct, idiomatic THRML code, centered on Ising machines and how they are trained. THRML is Extropic's JAX-based GPU simulator for the block Gibbs sampling programs that run natively on Extropic's probabilistic computing hardware. Use this skill whenever the user mentions THRML, Extropic, probabilistic…
ysyecust/write-reader-first-papers
Skill Codex
Rewrite, restructure, translate, or audit academic manuscripts so first-time readers can identify the problem, contribution, evidence, value, and limitations without decoding internal jargon or formulaic prose. Use for English or Chinese papers, abstracts, introductions, methods, results, conclusions, highlights…
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: