scientific skills

Haojae/scipilot-figure-skill

Skill Claude CodeCodex

A scientific data-visualization adviser that examines a dataset before recommending a chart and preparing a publication-quality figure.

noamseg/interview-coach-skill

Skill Claude CodeCodex

High-rigor interview coaching skill for job seekers. Use when someone wants structured prep, transcript analysis, practice drills, storybank management, or performance tracking. Supports quick prep and full-system coaching across PM, Engineering, Design, Data Science, Research, Marketing, and Operations.

JuneYaooo/nihaisha-nishi-tcm

Skill Claude CodeCodex

A reference for questions about Ni Haisha’s traditional Chinese medicine course material, including texts, lectures, and clinical cases.

mikubaka88/CCFA-Skills

Skill Claude CodeCodex

Turn rough CCF research directions into concrete problem, gap, insight, method, novelty, and evidence plans. Use for idea optimization, fuzzy idea concretization, develop a fuzzy idea with no score, research direction shaping, early direction exploration, salvage routes, 优化idea, 具象化idea, 研究思路优化, 找方向, 方向探索. Do not rank…

aipoch/medical-research-skills

Skill Claude CodeCodex

Use when correcting batch effects in merged bulk expression matrices with sample-level batch metadata while preserving biological group structure and generating before-and-after QC plots. NOT for: single-cell integration, raw FASTQ processing, differential expression without batch labels, or datasets without…

aipoch/medical-research-skills

Skill Claude CodeCodex

Use this skill to run GSVA or ssGSEA pathway-level differential analysis from a bulk expression matrix and a sample group file, then generate a heatmap from the saved GSVA result object. Trigger keywords: GSVA, ssGSEA, pathway enrichment, KEGG pathway analysis, MSigDB. NOT for: gene-level differential expression…

mims-harvard/ToolUniverse

Skill Claude CodeCodex

Cancer cell-line selection and profiling for experimental model choice. Cross-references DepMap, Cellosaurus, COSMIC, PharmacoDB to deliver identity verification, mutation/CNV profile, gene dependencies, drug sensitivities, and druggable targets. Use to answer 'which cell line should I use for studying gene X?' or 'is…

mims-harvard/ToolUniverse

Skill Claude CodeCodex

Search and retrieve clinical practice guidelines from 12+ authoritative sources — NICE, WHO, NCCN, AHA, ADA, SIGN, USPSTF, IDSA, NIH consensus, ESMO/ESC/EASL European societies, and US specialty associations. Use for evidence-graded treatment recommendations, dosing protocols, screening guidance, and…

mims-harvard/ToolUniverse

Skill Claude CodeCodex

Assess drug-drug interactions — CYP metabolic interactions (substrate/inhibitor/inducer), transporter (P-gp, BCRP, OATP) effects, pharmacodynamic synergy/antagonism, clinical significance scoring, and management recommendations. Use for polypharmacy review, prescribing decision support, and safety analysis when adding…

juliye2025/evil-read-arxiv

Skill Claude CodeCodex

通过 DBLP 与 Semantic Scholar 搜索 CVPR、ICCV、ECCV、ICLR、AAAI、NeurIPS、ICML 等顶会论文，评分后生成 Obsidian 年度推荐笔记。Use when the user asks for a conference/year paper list, top-conference recommendations, or papers filtered by venue.

ai4s-research/open-science

Skill Claude CodeCodex

Use when the user asks to run heavy or GPU work on Modal (the cloud compute platform) — writing a Modal function in the workspace, running it with the user's own modal CLI + token, and bringing results back. Data-to-compute for jobs too big for the laptop, without a Slurm cluster.

ai4s-research/open-science

Skill Claude CodeCodex

Use when the user asks to run, submit, monitor, or cancel a job on a remote machine over SSH — their own GPU/CPU server, a workstation, or a Slurm cluster ("the cluster", a login node, "my 3090 box", "the compute server"). Picks a saved machine, runs the work directly over SSH (or via Slurm when present), tracks it…

nagisanzenin/engram

Skill Claude CodeCodex

Clear due memory reviews with free recall — the two-minute habit that makes learning permanent. Use when reviews are due, or the user wants to review, practice, or "do my engram reviews".

andyhuo520/aetherviz-master

Skill Claude CodeCodex

A tool for turning a teaching topic into an interactive educational webpage with animated 2D and 3D visual elements.

GPTomics/bioSkills

Skill Claude CodeCodex

Test whether two or more traits share a causal variant at a locus using Bayesian colocalization (coloc.abf, coloc.susie, HyPrColoc, moloc, eCAVIAR, SMR/HEIDI, PWCoCo, SharePro). Use when integrating GWAS with eQTL/sQTL/pQTL/mQTL, distinguishing shared causal variants from LD-driven coincidence, handling allelic…

omicverse/omicverse

Skill Claude CodeCodex

Transform, clean, reshape, and preprocess data using pandas and numpy. Works with ANY LLM provider (GPT, Gemini, Claude, etc.).

omicverse/omicverse

Skill Claude CodeCodex

Publication-quality matplotlib/seaborn plots: scatter, heatmap, violin, bar, line, multi-panel figures. Works with ANY LLM provider.

dacnay816y62-hub/cinema-dna-21x9x3

Skill Claude CodeCodex

A visual image-generation skill that turns people, places, products, buildings, history, mythology, science fiction, or simple stories into cinematic 21:9 images or three-panel scenes. It can also create named title treatments, text posters, and visual-system covers when explicitly requested.

ClawBio/ClawBio

Skill Claude CodeCodex

Genome, transcriptome, and protein completeness assessment via BUSCO v6. Agentic lineage routing from organism description, all three BUSCO modes, auto-lineage support, and full demo mode without the BUSCO binary.

ClawBio/ClawBio

Skill Claude CodeCodex

Transcriptome-wide virtual spatial transcriptomics from H&E histology with DeepSpot-M. Scores a 224x224 tile and returns per-gene log1p-CPM values for any HGNC symbols you ask for, with a CSV, a report and a reproducibility bundle.

ClawBio/ClawBio

Skill Claude CodeCodex

Full reimplementation of DnaSP 6 for population genetics analysis of aligned DNA sequences. Covers nucleotide diversity, haplotype statistics, neutrality tests (Tajima's D, Fu & Li's D/F, R2), linkage disequilibrium (D, D', R², ZnS, Za, ZZ), minimum recombination (Rm), mismatch distribution, InDel polymorphism…

PharMolix/OpenBioMed

Skill Claude CodeCodex

Query CZ CELLxGENE Census (61M+ cells). Filter by cell type/tissue/disease, retrieve expression data, and integrate with scanpy/PyTorch for population-scale single-cell analysis. Use this skill when: (1) Querying single-cell expression data by cell type, tissue, or disease, (2) Exploring available single-cell datasets…

xuzhougeng/wisp-science

Skill Claude CodeCodex

Correctness and legibility checklist for publication figures, plus a matplotlib sidecar. Load before plotting anything and call applyfigurestyle() (role-mapped font ladder, outward ticks, frameless legends, 300-dpi saves, CJK-safe fonts). Covers data fidelity, label budgets, axis/colour/type rules, chart choice by…

xuzhougeng/wisp-science

Skill Claude CodeCodex

Use this skill whenever the user provides a scientific paper PDF and asks for a group-meeting literature report, journal-club slides, 文献汇报PPT, 组会PPT, paper presentation, article walkthrough, or to explain a paper with PowerPoint. The skill first reconstructs the paper's scientific logic, then builds author/background…