13,288 tagged Scientific, measured the same way as everything else here.
Browse within: bioinformatics 357LLM 278ai-scientist 271literature-review 243agents 208academic-research 207ai-scientists 193reasoning-agent 193reasoning-language-models 193tool-use 193agent 182biology 176computational-biology 142data-analysis 135
XiaoMaColtAI/math-modeling-skill
Skill Claude CodeCodex
A workflow for mathematical modelling, where real-world questions are represented with mathematics and solved with code or analysis.
Skill Claude CodeCodex
Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure search, 2D/3D generation, similarity, reactions. For standard workflows with simpler interface, use datamol (wrapper around RDKit). Use rdkit for advanced control, custom…
Skill Codex
A workflow for choosing and producing data visualisations from supplied data. It focuses on selecting a chart that answers the stated question, preserving units and limits, and delivering a viewable HTML file with the chart.
Skill Claude CodeCodex
Using the Petrinaut tools and writing net code. Use before the first net change, before writing lambda, kernel, dynamics, visualizer, metric or scenario code, before drafting or creating an experiment, and when the USER asks how something in the Petrinaut UI works.
pedrohcgs/claude-code-my-workflow
Skill Claude Code needs its repo
Comprehensive manuscript review with three modes: single-pass (default), --adversarial critic-fixer loop, and --peer [journal] simulated peer-review pipeline (editor + 2 dispositioned referees + editorial decision, calibrated to a target journal). R&R continuation via --peer --r2/--r3; hostile-editor stress test via…
PrathamLearnsToCode/paper2code
Skill Claude CodeCodex
Converts an arxiv paper into a minimal, citation-anchored Python implementation. Trigger when user runs /paper2code with an arxiv URL or paper ID, says "implement this paper", or pastes an arxiv link asking for implementation. Flags all ambiguities honestly. Never invents implementation details not stated in the paper.
icebird1998/drawio-scientific-illustrator
Skill Codex
Recreate, trace, revise, inspect, or export static scientific figures and schematic illustrations live inside the visible draw.io desktop canvas through draw.io's own graph API. Use when the user wants to watch an MCP draw a reference figure step by step in draw.io, explicitly rejects XML-first generation or…
lishix520/academic-paper-skills
Skill Claude CodeCodex
Systematic writing framework for philosophy and interdisciplinary academic papers from optimized outline to submission-ready manuscript. Use when users want to: (1) write a paper from a detailed outline, (2) ensure quality control during writing, (3) maintain consistency across chapters, (4) prepare a submission-ready…
Skill Claude CodeCodex
Draft a LaTeX research paper from all previous stage outputs.
matlab/simulink-agentic-toolkit
Skill Claude CodeCodex
Building or editing Simulink (.slx) models that stream signals in frames using DSP System Toolbox — audio, vibration, radar, comms. Use when the prompt names a Simulink block (Discrete FIR Filter, Buffer, Unbuffer, Rate Transition, Downsample, Upsample, Sample-Rate Converter, FIR Decimation, Time Scope, Spectrum…
Skill Claude CodeCodex
Test whether two or more traits share a causal variant at a locus using Bayesian colocalization (coloc.abf, coloc.susie, HyPrColoc, moloc, eCAVIAR, SMR/HEIDI, PWCoCo, SharePro). Use when integrating GWAS with eQTL/sQTL/pQTL/mQTL, distinguishing shared causal variants from LD-driven coincidence, handling allelic…
Skill Claude CodeCodex
Trigger when: (1) User mentions "manimgl" or "ManimGL" or "3b1b manim", (2) Code contains from manimlib import , (3) User runs manimgl CLI commands, (4) Working with InteractiveScene, self.frame, self.embed(), ShowCreation(), or ManimGL-specific patterns. Best practices for ManimGL (Grant Sanderson's 3Blue1Brown…
Xiangyue-Zhang/auto-deep-researcher-24x7
Skill Codex
Check status of running autonomous experiment loops.
Skill Claude CodeCodex
Generate diverse lead compounds for a specific protein target using structure-based drug design with MolCraft. Use this skill when: (1) Designing drug candidates for a known protein target (PDB ID or disease name), (2) Generating structurally diverse molecules with optimized binding affinity, (3) Filtering candidates…
Skill Claude CodeCodex
Use this Skill to solve PDEs with the finite element method using FEniCS/dolfinx: weak form formulation, mesh generation with gmsh, Poisson/elasticity problems, boundary conditions, and paraview export.
Skill Claude CodeCodex
Production-ready genomics and epigenomics data processing for BixBench questions. Handles methylation array analysis (CpG filtering, differential methylation, age-related CpG detection, chromosome-level density), ChIP-seq peak analysis (peak calling, motif enrichment, coverage stats), ATAC-seq chromatin accessibility…
Skill Claude Code needs its repo
Create professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference presentations, academic posters, and scientific communication. Includes layout design, color schemes, multi-column formats, figure integration, and poster-specific best practices for visual communication.
LeonChaoX/qinyan-academic-skills
Skill Claude Code needs its repo
Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process with (1) section outlines with key points using research-lookup then (2) convert to flowing prose. IMRAD structure, citations (APA/AMA/Vancouver), figures/tables, reporting…
icebird1998/scientific-illustrator
Skill Codex
Review and score an existing scientific illustration in visible draw.io, Microsoft PowerPoint, or WPS Presentation without hiding defects through flattening. Use for reference-fidelity checks, layout cleanup, connector review, text-fit checks, deep editability and raster-atomicity inspection, local-region gates, or…
Arcadia-1/virtuoso-bridge-lite
Skill Claude CodeCodex
Run Cadence Spectre simulations remotely via virtuoso-bridge: upload netlists, execute, parse PSF results. TRIGGER when the user wants to run a SPICE/Spectre simulation from a netlist file, do transient/AC/PSS/pnoise analysis outside Virtuoso GUI, parse PSF waveform data, run multiple simulations in parallel across…
Skill Claude CodeCodex
Use this skill when asked to review, edit, or improve the writing quality of a scientific or engineering manuscript. Triggers include: "review my writing," "check my manuscript," "improve clarity," "clean up the prose," "edit for journal submission," "writing review," or any request to evaluate sentence-level quality…
bioMate-AI/biomate-bioconductor-kb
Skill Claude Code
The ability to efficiently represent and manipulate genomic annotations and alignments is playing a central role when it comes to analyzing high-throughput sequencing data (a.k.a. NGS data). The GenomicRanges package defines general purpose.
Skill Claude CodeCodex
Run real bioinformatics, drug-discovery, and clinical workflows on BioMate's BioMate cloud infrastructure. Use whenever the user asks to screen compounds (ADMET, docking), analyze sequencing data (RNA-seq, WGS, variant calling), reconstruct cryo-EM, model PK/PBPK, predict protein structure, or generate IND / CRO…
Skill Claude CodeCodex ✓ vendor
Use when the user wants to run a YOLO-Master task (train/val/predict/track/export/benchmark) or use the Agent Skill dispatcher.
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: