12,428 tagged Scientific, measured the same way as everything else here.
Browse within: bioinformatics 260ai-scientist 207LLM 186agents 186biology 170reasoning-language-models 165ai-scientists 164reasoning-agent 164tool-use 164agent 159data-analysis 133cancer-genomics 132computational-biology 132literature-review 120
Skill Codex
Find program-conditioned math results, constructions, examples, counterexamples, analogies, and background references. Use when the current active program needs repair, mutation, analogy, a program shift, or carefully gated obstruction search.
Skill Claude CodeCodex
A research workflow that turns structured biology research information into a complete manuscript plan.
Skill Claude CodeCodex
Handles batch effects in bulk RNA-seq via design-matrix inclusion (the correct path for DE), ComBat/ComBat-seq for visualization, SVA for unknown latent factors, RUVSeq for negative-control-gene-anchored unwanted variation, and limma::removeBatchEffect for plotting only. Encodes the Nygaard 2016 cardinal sin against…
Agent-Threat-Rule/agent-threat-rules
Skill Claude CodeCodex
Generate clinical trial protocols for medical devices or drugs. This skill should be used when users say "Create a clinical trial protocol", "Generate protocol for [device/drug]", "Help me design a clinical study", "Research similar trials for [intervention]", or when developing FDA submission documentation for…
Skill Claude Code needs its repo
A workflow for choosing mathematical models and shaping a modelling paper around its scoring criteria. It also defines coordination rules for keeping a long modelling task on track.
Skill Claude CodeCodex
Generate publication-quality molecular visualization images using PyMOL. Use this skill whenever the user mentions PyMOL, molecular visualization, protein rendering, structure figures, PDB visualization, ray tracing molecules, or wants to create images of proteins, ligands, binding sites, protein-protein interactions…
Skill Claude CodeCodex
Drive an agentic loop that iteratively optimizes a GPU kernel for maximum speedup. Use this skill whenever the user wants to optimize / speed up / benchmark a GPU kernel (CUDA, Triton, TileLang, C++, Python), mentions AKO / AKO4ALL / AKO4X / agentic kernel optimization, asks to "make this kernel faster", or has a…
Skill Codex
A Chinese-language digest workflow for finding recent research papers on arXiv, an online archive for academic papers, and optionally sending the results to Feishu. It ranks papers conservatively by relevance and summarizes them from their abstracts.
TingxiYu/academic-figure-skill
Skill Codex
Academic-grade scientific figure creation for Nature/Cell/Science journals. Use when the user asks to create, polish, review, or export scientific figures for manuscript submission. DO NOT trigger for: interactive dashboards (Plotly/Bokeh/Altair), exploratory data analysis without publication intent, math function…
Skill Claude CodeCodex
A Chinese-language guide for solving mathematical modeling competition problems. It covers China’s CUMCM and America’s MCM/ICM, where teams use mathematics and code to answer real-world problem statements.
Skill Claude CodeCodex
Use when the user asks to run a full empirical / causal analysis in Python — by default in the style of an applied economics paper (AER / QJE / JPE / ReStud / AEJ) with DID / RD / IV / SCM / DML / matching, written-out estimating equation + identifying assumption, Table 1 / Table 2 / event-study figure / robustness…
Skill Claude CodeCodex
Use for any task involving the tangermeme library — post-training analysis of genomic sequence-to-function (S2F) deep learning models. Triggers on predictions, DeepLIFT/SHAP attributions, marginalization/ablation/spacing of motifs, saturation mutagenesis (ISM), variant effect scoring, sequence design, seqlet calling…
Skill Claude CodeCodex
A structured system for investigating researchers, their qualifications, publications, affiliations, relationships, and possible academic misconduct.
CYC2002tommy/Deep-Research-Agent
Skill Claude CodeCodex
End-to-end scientific research pipeline combining Exa Search, Playwright, deep-research, text-humanization, and iterative Remi peer review.
heyu-233/engineering-figure-agent
Skill Claude CodeCodex
Use when the user needs engineering or research-paper figures: system architecture diagrams, algorithm workflows, hardware schematics, benchmark charts, ablation plots, figure briefs, redraws, image edits, or exact publication-style plots from numeric data. Covers Gemini, Nano Banana, OpenAI image models, and local…
Skill Claude CodeCodex
Use when a researcher is choosing, framing, refining, or stress-testing a research question, hypothesis, thesis topic, project idea, grant direction, paper angle, or stalled research direction.
Skill Claude CodeCodex
Generate high-quality academic Beamer slides from a thesis/paper (PDF, Word, or LaTeX source). Compatible with Claude Code and Codex. Supports thesis defense, proposal presentations, and conference talks. Built-in layout library with 13 professional page types, 5 color schemes, and interactive editing loop. Use when…
Skill Claude CodeCodex
A structured method for analyzing interviews and other qualitative research material using grounded theory, a research approach that builds concepts from the data. It includes open coding, grouping observations into categories, and later connecting categories into a broader explanation.
Skill Claude CodeCodex
A skill for explaining maths and physics through Manim animations and interactive web pages. Manim is a tool for creating programmatic mathematical animations.
Skill Codex
Audit, redesign, generate, and improve IEEE manuscript figures, tables, captions, result presentation, plotting scripts, visual polish, hybrid Python/R plus vector-editor workflows, publication-ready matplotlib house style, and layout using routed visual-evidence checks. Use when checking or creating plot readability…
Skill Claude CodeCodex
Write code that calls the installed nvMolKit Python API for GPU-accelerated, batched RDKit-style operations - Morgan fingerprints, Tanimoto/cosine similarity, ETKDG conformer embedding, MMFF/UFF optimization, TFD, conformer RMSD, Butina clustering, substructure search, and maximum common substructure (MCS) search. Use…
aws-samples/amazon-bedrock-agents-healthcare-lifesciences
Skill Claude CodeCodex ✓ vendor
Use when querying biomedical databases (UniProt, ClinVar, gnomAD, PDB, Reactome, Open Targets, etc.) via the Biomni AgentCore Gateway MCP server. Covers protein lookup, variant interpretation, pathway analysis, drug-target associations, and genomic annotation queries. Use when user asks to find protein info, check…
Skill Claude CodeCodex
Apply the bioengineering, mechanobiology, and lymphatic transport reasoning of J. Brandon Dixon, professor of mechanical and biomedical engineering at Georgia Institute of Technology. Reach for this skill whenever analyzing lymphatic biomechanics, active vessel contractility versus passive drainage, peristaltic fluid…
wooly99/geng-academic-fraud-detector
Skill Claude CodeCodex
An academic-paper fraud checker that analyzes PDF research papers for possible data manipulation and other research misconduct. A PDF is a fixed-layout document format; a Western blot is a laboratory image used to detect proteins.
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: