12,323 tagged Scientific, measured the same way as everything else here.
Browse within: bioinformatics 261ai-scientist 207agents 186LLM 185biology 171reasoning-language-models 165ai-scientists 164reasoning-agent 164tool-use 164agent 159data-analysis 134cancer-genomics 133computational-biology 133literature-review 120
Skill Codex
Install, open, download, or deploy GEO Citation Lab from its GitHub repository. Use when a user asks to install the lightweight offline viewer, open the research reports locally, download the full GEO citation dataset, prepare the analysis environment, or publish the viewer to GitHub Pages.
Skill Codex
Create, revise, and troubleshoot publication-ready scientific plots in Python with cnsplots, including distribution, regression, heatmap, genomics, survival, set, flow, and multi-panel figures. Use when a user asks for cnsplots code, Cell/Nature/Science-style visualization, precise physical figure dimensions…
UKGovernmentBEIS/inspect_evals
Skill Claude Code
Review a single evaluation's validity — whether its claims hold up, whether its name is accurate, whether samples can be both succeeded and failed at, and whether scoring measures ground truth. Use when user asks to check validity of an eval, or as part of the Master Checklist workflow. Do NOT use for code quality or…
Skill Claude CodeCodex
Use this skill when working with bnlearn, a Python library for Bayesian networks, probabilistic graphical models, causal discovery, parameter learning, structure learning, inference, sampling, and directed acyclic graphs (DAG).
Skill Claude Code
Extract, filter, and label research papers from rawdata files (.bib, .html) using the two-level taxonomy defined in SKILL.md. Use this skill when the user wants to process new venue data, label papers, add new conferences to the database, run the paper classification pipeline, rebuild the website, or batch-process a…
Skill Claude Code
Process whole-slide pathology images (WSIs) with TRIDENT: tissue segmentation, patch coordinate extraction, and patch/slide feature (embedding) extraction with foundation models (UNI, CONCH, Virchow, Gemma, Titan, GigaPath, etc.). Use when the user works with WSIs (.svs/.tiff/.ndpi/.mrxs/.czi/.dcm), mentions TRIDENT…
meleantonio/awesome-econ-ai-stuff
Skill Claude CodeCodex
Build and solve Walrasian general equilibrium models with theory derivations and Julia computation.
Skill Claude CodeCodex ✓ vendor
Generate clinical trial protocols for medical devices or drugs. This skill should be used when users say "Create a clinical trial protocol", "Generate protocol for [device/drug]", "Help me design a clinical study", "Research similar trials for [intervention]", or when developing FDA submission documentation for…
Skill Claude Code
Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full support with templates, regulatory compliance (HIPAA, FDA, ICH-GCP), and validation…
Skill Claude CodeCodex
A writing guide for applications to China’s National Natural Science Foundation, a major public research-funding body. It covers sections such as the abstract, background, research plan, originality, and feasibility.
AAASS554/codex-academic-paper-skills
Skill Codex
A writing workflow for turning a real software or computer-science project and an existing thesis draft into a final undergraduate thesis manuscript. It grounds the text in project evidence and applies the required school format.
Adkid-Zephyr/anti-defensive-writing-Skill
Skill Claude CodeCodex
Stops defensive writing across the entire paper lifecycle — writing, revising, cutting, and organizing experiments. Treats the paper as a press conference, not a project summary, lab log, or self-audit: identify the single most publishable strength of the work and build the most favorable, complete, and persuasive…
Skill Claude CodeCodex
Use when helping someone USE Infomap as an analysis tool — running the map equation for community detection via the Infomap CLI, Python package, R package, or notebooks; choosing a network representation or flow model (multilayer, memory/state, metadata, bipartite); reproducible analysis; result interpretation; or…
Skill Claude CodeCodex
A tool that translates arXiv research papers into Chinese PDF files. arXiv is an online repository where researchers share scientific papers before or alongside formal publication.
Skill Codex
Rigor Reproduce compatible skill slug for README-first deep learning repository reproduction. Use when the user wants an end-to-end, minimal-trustworthy flow that reads the repository first, selects the smallest documented inference or evaluation target, coordinates intake, setup, trusted execution, optional trusted…
Skill Codex
Use when writing or revising scientific manuscripts, abstracts, figures, or references for journal submission and you need full-paragraph prose, scientific structure, citation-style guidance, or reporting-guideline support.
Skill Claude CodeCodex
Panel design for DEVELOPING / dynamic systems (embryonic organs, differentiation, regeneration). The target experiment is usually a LATE / terminal stage, but the biology is a trajectory: terminal cell types are end-products of earlier lineage programs. A panel built from the target stage alone resolves terminal…
Skill Claude CodeCodex
Use this skill for genetics, genome source, variant, gene, phenotype, disease, screen, pharmacogenomics, and Genomi install/setup maintenance questions.
claesbackman/AI-research-feedback
Skill Claude Code
Run an 8-agent pre-submission referee report for an academic paper targeting a specified journal.
NVIDIA-BioNeMo/bionemo-agent-toolkit
Skill Claude CodeCodex
Write code that calls the installed nvMolKit Python API for GPU-accelerated, batched RDKit-style operations - Morgan fingerprints, Tanimoto/cosine similarity, ETKDG conformer embedding, MMFF/UFF optimization, TFD, conformer RMSD, Butina clustering, and substructure search. Use when the user is importing nvmolkit.…
Skill Claude Code
Use this skill to map the genealogical lineage and historical progression of a research field. It is designed to visualize the evolutionary path of ideas, showing how technical challenges in earlier works were addressed by subsequent research improvements. The final deliverable is a Markdown file with embedded Mermaid…
alfonso0512/research-writing-skill
Skill Claude CodeCodex
A collection of 30 prompt templates for writing and reviewing scientific papers. It covers tasks such as translating, editing, summarizing research, writing sections, creating figure captions, and preparing reviewer replies.
Skill Claude CodeCodex
A chatbot-based workflow for reading daily research papers with iDeer, a paper-digest tool.
Skill Claude Code
Convert academic papers (PDF) into conference posters (HTML/PNG). You are the conductor: you decide what each section needs — an original paper figure or text — write the outline, hand-author the poster HTML, and iterate on the render using your own visual read and a blind-reader content quiz. Use when the user wants…
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: