12,450 tagged Scientific, measured the same way as everything else here.
Browse within: bioinformatics 260ai-scientist 207LLM 186agents 186biology 170reasoning-language-models 165ai-scientists 164reasoning-agent 164tool-use 164agent 159data-analysis 133cancer-genomics 132computational-biology 132literature-review 120
Skill Claude CodeCodex
Use this skill whenever the user wants to perform fMRI preprocessing, first-level analysis, ROI extraction, functional connectivity, effective connectivity, or atlas-based alignment to MNI152 space using either fMRIPrep, HCP-style pipelines, or CONN Toolbox. Triggers include: 'fmri', 'fMRI analysis', 'functional…
Skill Claude CodeCodex
Rowan is a cloud-native molecular modeling and medicinal-chemistry workflow platform with a Python API. Use for pKa and macropKa prediction, conformer and tautomer ensembles, docking and analogue docking, protein-ligand cofolding, MSA generation, molecular dynamics, permeability, descriptor workflows, and related…
Skill Claude CodeCodex
Query OpenEvidence (clinical evidence assistant) without an MCP server. Closely mirrors the openevidence-mcp tool surface - check auth, list question history, fetch an article, or ask a new question (with optional follow-up thread). Use when the user asks medical / evidence-based clinical questions, references…
Skill Codex
Run an adversarial mathematical workflow in Codex: verify proofs, write hard proofs, explore conjectures, search for counterexamples, and triage possible gaps. Use for important theorem checks, failed proof attempts, conjectures, independent verification, or requests like 'audit this proof', 'find a counterexample'…
Skill Claude CodeCodex
Use when the user wants a specific weather model, needs ensemble uncertainty ranges, requests seasonal outlooks, or asks for long-term climate projections.
Skill Claude CodeCodex
Crawl and analyze post-layout parasitic netlists without running SPICE. Answers "what's the effective resistance from node A to node B across this massive R mesh?", "inside the VREFN mesh, which device pins are electrically farthest apart?", "which nets have the worst coupling?", "where does settling bottleneck?" — by…
Skill Claude CodeCodex
Validate, clean, and audit academic references with OneCite from a local repository checkout. Use when a workflow needs deterministic citation verification, BibTeX cleanup, benchmark gating, or template discovery.
Skill Claude CodeCodex
Use when the user asks Codex, Claude Code, ChatGPT-style coding agents, or another AI agent to build, inspect, run, debug, or revise COMSOL Multiphysics / COMSOL Desktop models. Choose the simplest real COMSOL control path for the task: saved .mph inspection, local COMSOL documentation, direct COMSOL executables…
Jerry-del975/ai-zemax-optical-design
Skill Claude CodeCodex
Automated optical design agent for Ansys Zemax OpticStudio 2024 R1 through ZOS-API. Use when Codex should automatically turn optical requirements or an existing .zmx/.zos/.zar file into an executable Zemax design loop: parse requirements, create or load a lens model, run baseline analyses, choose variables and…
Skill Claude CodeCodex
A method for turning a maths problem, especially a geometry problem, into GeoGebra files. GeoGebra is software for creating and exploring interactive mathematical diagrams.
devcat4029-skxez/research-materials-ai-boundary-check
Skill Claude CodeCodex
Help researchers decide what must be checked before using AI, OCR, literature assistants, storage, or cloud services with research materials. Use for permission, privacy, provenance, institutional approval, retention, deletion, sharing, or incident-planning questions. Work from metadata and synthetic examples only…
Jasper0122/CLI-Anything-Arcgis-Pro
Skill Claude CodeCodex
Drive ArcGIS Pro (ArcPy) from the command line — professional cartographic export (layouts + Map Series / map books), geoprocessing, batch processing, and feature-class query/edit. Also ships a live-Pro MCP bridge that lets an agent operate the OPEN ArcGIS Pro session (the closed-source counterpart to CLI-Anything's…
Skill Claude CodeCodex
Use when Codex needs to answer questions or write Python code for Google Earth Engine (GEE), the Earth Engine Python API, geemap, ee.Image/ImageCollection/FeatureCollection workflows, remote-sensing scripts, exports, reducers, cloud masking, dataset lookup, or Liu Zhao's local GEE/geemap knowledge and practical…
Skill Claude CodeCodex
An academic-integrity self-review skill for checking research papers, revisions, and published-work concerns for possible data, image, statistical, or reporting problems.
Skill Claude CodeCodex
Visualize and analyze simulation data using NVIDIA Kit-CAE (Omniverse). Supports native CAE USD-plugin formats including CGNS, VTK, EnSight Gold, OpenFOAM, NumPy, EDEM, NanoVDB, FLASH AMR, Eclipse reservoir data, and Trimesh assets. Covers volume rendering, faces, geometry and volume slices, iso-surfaces, streamlines…
Laboratoire-de-Chemoinformatique/SynPlanner
Skill Claude CodeCodex
Plan retrosynthetic routes, curate reaction data, extract reaction rules, train retrosynthesis policy and value networks, and analyse synthetic routes with the installed SynPlanner package. SynPlanner is built on chython (chython-synplan, formerly CGRtools), not RDKit. Use when the user imports synplan., asks for a…
Skill Claude CodeCodex
Train, evaluate, and use Cherimoya sequence-to-function genomic models with the cherimoya command-line tools or Python API. Use when a user wants to run the end-to-end pipeline, use a trained model to do downstream tasks, or troubleshoot a run. Designed for users who may be new to Cherimoya or to sequence modeling…
shanselman/nightscout-cgm-skill
Skill Claude CodeCodex
Analyze CGM blood glucose data from Nightscout. Use this skill when asked about current glucose levels, blood sugar trends, A1C estimates, time-in-range statistics, glucose variability, or diabetes management insights.
SteadfastAsArt/geoscience-skills
Skill Claude CodeCodex
GSLIB-inspired geostatistics library for variogram analysis, kriging, and simulation. Use when Claude needs to: (1) Calculate experimental variograms, (2) Fit variogram models, (3) Perform simple/ordinary kriging, (4) Run sequential Gaussian simulation (SGSIM), (5) Apply normal score transforms, (6) Decluster spatial…
Skill Claude CodeCodex
Use TigerBx 0.2.3+ for research-use neuroimaging workflows: T1w brain extraction and segmentation, HLC parcellation, registration, VBM, EPI/DTI distortion correction, NERVE embeddings, and image metrics. Trigger when choosing or calling tigerbx Python APIs/CLI, interpreting outputs or labels, or building TigerBx batch…
myzhao0114-del/scientific-figure-skill
Skill Claude CodeCodex
Create publication-grade scientific figures and analysis deliverables from tabular data. Use when the user provides Excel, CSV, or similar structured data and wants charts, plotting, exploratory analysis, figure polishing, statistical annotations, captions, or a report suitable for a paper, thesis, dissertation, lab…
AlexWortega/claude-autoresearch-skill
Skill Claude CodeCodex
Autonomously research an ML task and run MANY bounded experiments to find the best config — a fixed-budget edit→train→eval→keep-or-discard loop in the spirit of karpathy/autoresearch, wrapped in the ml-intern orchestrator model and fanned out with a Claude Code dynamic workflow. Runs LONG: an iterative generational…
Skill Claude CodeCodex
Run Stata commands, .do files, view data, inspect results, and get help from the terminal. Wraps PyStata with a daemon mode for fast execution. Built-in Stata reference library with 57 topics. Designed for AI agents.
Norman-bury/reduce-ai-style-writing
Skill Claude CodeCodex
A rewriting aid for Chinese academic writing, including papers, abstracts, introductions, methods, results, and limitations. It aims to reduce signs that text was generated by AI while keeping the original terminology, facts, citations, data limits, and argument structure.
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: